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Mutant Information

Mutant Name	FN3861-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3861-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7570211 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g095000
SBS Chr1 8055977 T-A Homo INTRON
SBS Chr1 13130461 C-T Homo INTERGENIC
SBS Chr1 23518882 T-C Homo INTERGENIC
SBS Chr1 36148596 T-C Homo INTERGENIC
SBS Chr1 36148773 T-A Homo INTERGENIC
SBS Chr1 39746633 G-T Hetero INTERGENIC
SBS Chr2 960792 C-A Hetero INTERGENIC
SBS Chr2 2064806 G-A Hetero INTERGENIC
SBS Chr2 18914814 A-G Hetero INTRON
SBS Chr3 13310054 C-A Hetero INTERGENIC
SBS Chr3 34904982 T-A Homo INTERGENIC
SBS Chr4 8394120 G-A Hetero INTERGENIC
SBS Chr4 17667782 C-T Hetero INTERGENIC
SBS Chr4 29660285 T-C Hetero INTERGENIC
SBS Chr4 35596582 G-T Homo INTRON
SBS Chr5 1266744 C-A Hetero INTRON
SBS Chr5 9980405 G-A Homo INTERGENIC
SBS Chr5 12916861 C-A Homo INTERGENIC
SBS Chr5 16009971 G-A Hetero INTERGENIC
SBS Chr7 16080192 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 22406973 C-G Homo INTERGENIC
SBS Chr8 1330020 G-A Hetero INTERGENIC
SBS Chr8 4353286 A-T Hetero INTERGENIC
SBS Chr8 7121098 C-T Hetero INTERGENIC
SBS Chr8 12440460 T-C Hetero INTERGENIC
SBS Chr8 19119978 C-T Hetero INTERGENIC
SBS Chr8 19460303 G-A Hetero INTERGENIC
SBS Chr8 20644049 T-C Homo UTR_3_PRIME
SBS Chr9 3869058 G-A Hetero INTERGENIC
SBS Chr9 6685489 C-T Homo INTERGENIC
SBS Chr10 6434307 G-A Hetero INTERGENIC
SBS Chr10 14602746 A-G Hetero INTERGENIC
SBS Chr11 6350926 C-T Homo INTRON
SBS Chr11 23866437 G-T Homo INTERGENIC
SBS Chr12 13502263 T-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 6991001 7011000 19999 2
Deletion Chr5 12916397 12916398 1
Deletion Chr9 14628001 14740000 111999 13
Deletion Chr9 14746001 15052000 305999 31
Deletion Chr8 16424952 16424960 8
Deletion Chr7 17524091 17524102 11
Deletion Chr2 23695001 23705000 9999 3
Deletion Chr7 25406639 25406645 6
Deletion Chr1 25693350 25693361 11
Deletion Chr3 29638001 29646000 7999 OsKitaake03g308900
Deletion Chr1 36910877 36910890 13

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8972525 8972528 2
Insertion Chr5 16138841 16138844 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 12628579 12675366
Inversion Chr10 12628587 12675368
Inversion Chr1 36662705 36912688 OsKitaake01g393100
Inversion Chr1 36805142 36912688 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 1309727 Chr4 25804970
Translocation Chr8 2057418 Chr6 30680818 2
Translocation Chr8 2057420 Chr6 30680328 2
Translocation Chr9 6970207 Chr1 6990310
Translocation Chr9 6970211 Chr1 6990426
Translocation Chr5 9979817 Chr4 24882903

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7570211	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g095000
SBS	Chr1	8055977	T-A	Homo	INTRON
SBS	Chr1	13130461	C-T	Homo	INTERGENIC
SBS	Chr1	23518882	T-C	Homo	INTERGENIC
SBS	Chr1	36148596	T-C	Homo	INTERGENIC
SBS	Chr1	36148773	T-A	Homo	INTERGENIC
SBS	Chr1	39746633	G-T	Hetero	INTERGENIC
SBS	Chr2	960792	C-A	Hetero	INTERGENIC
SBS	Chr2	2064806	G-A	Hetero	INTERGENIC
SBS	Chr2	18914814	A-G	Hetero	INTRON
SBS	Chr3	13310054	C-A	Hetero	INTERGENIC
SBS	Chr3	34904982	T-A	Homo	INTERGENIC
SBS	Chr4	8394120	G-A	Hetero	INTERGENIC
SBS	Chr4	17667782	C-T	Hetero	INTERGENIC
SBS	Chr4	29660285	T-C	Hetero	INTERGENIC
SBS	Chr4	35596582	G-T	Homo	INTRON
SBS	Chr5	1266744	C-A	Hetero	INTRON
SBS	Chr5	9980405	G-A	Homo	INTERGENIC
SBS	Chr5	12916861	C-A	Homo	INTERGENIC
SBS	Chr5	16009971	G-A	Hetero	INTERGENIC
SBS	Chr7	16080192	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	22406973	C-G	Homo	INTERGENIC
SBS	Chr8	1330020	G-A	Hetero	INTERGENIC
SBS	Chr8	4353286	A-T	Hetero	INTERGENIC
SBS	Chr8	7121098	C-T	Hetero	INTERGENIC
SBS	Chr8	12440460	T-C	Hetero	INTERGENIC
SBS	Chr8	19119978	C-T	Hetero	INTERGENIC
SBS	Chr8	19460303	G-A	Hetero	INTERGENIC
SBS	Chr8	20644049	T-C	Homo	UTR_3_PRIME
SBS	Chr9	3869058	G-A	Hetero	INTERGENIC
SBS	Chr9	6685489	C-T	Homo	INTERGENIC
SBS	Chr10	6434307	G-A	Hetero	INTERGENIC
SBS	Chr10	14602746	A-G	Hetero	INTERGENIC
SBS	Chr11	6350926	C-T	Homo	INTRON
SBS	Chr11	23866437	G-T	Homo	INTERGENIC
SBS	Chr12	13502263	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	6991001	7011000	19999	2
Deletion	Chr5	12916397	12916398	1
Deletion	Chr9	14628001	14740000	111999	13
Deletion	Chr9	14746001	15052000	305999	31
Deletion	Chr8	16424952	16424960	8
Deletion	Chr7	17524091	17524102	11
Deletion	Chr2	23695001	23705000	9999	3
Deletion	Chr7	25406639	25406645	6
Deletion	Chr1	25693350	25693361	11
Deletion	Chr3	29638001	29646000	7999	OsKitaake03g308900
Deletion	Chr1	36910877	36910890	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	12628579	12675366
Inversion	Chr10	12628587	12675368
Inversion	Chr1	36662705	36912688	OsKitaake01g393100
Inversion	Chr1	36805142	36912688	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes