Search Kitaake

Mutant Information

Mutant Name	FN3869-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3869-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4293161 C-G Hetero INTERGENIC
SBS Chr1 4293162 A-G Hetero INTERGENIC
SBS Chr1 42902399 G-A Homo INTERGENIC
SBS Chr2 20211397 T-C Homo INTERGENIC
SBS Chr2 23892493 G-C Hetero UTR_3_PRIME
SBS Chr2 36146704 C-G Homo NON_SYNONYMOUS_CODING OsKitaake02g381700
SBS Chr3 1545236 T-C Hetero INTERGENIC
SBS Chr3 5887868 T-G Hetero INTERGENIC
SBS Chr3 7158417 T-A Homo STOP_GAINED OsKitaake03g099700
SBS Chr3 10497903 C-A Homo SYNONYMOUS_CODING
SBS Chr3 16998731 G-A Hetero INTERGENIC
SBS Chr4 3194198 G-A Hetero INTERGENIC
SBS Chr4 12820215 T-G Hetero INTERGENIC
SBS Chr4 22367503 T-C Hetero UTR_3_PRIME
SBS Chr5 9241172 A-G Homo INTERGENIC
SBS Chr6 14937742 A-T Hetero INTERGENIC
SBS Chr6 17600797 G-A Homo INTERGENIC
SBS Chr6 18803229 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 18867540 A-G Homo INTERGENIC
SBS Chr8 8964243 A-C Hetero INTERGENIC
SBS Chr8 18328342 A-T Hetero INTRON
SBS Chr8 21378203 T-C Hetero INTERGENIC
SBS Chr9 6330855 G-A Hetero UTR_5_PRIME
SBS Chr9 7063526 C-T Hetero INTERGENIC
SBS Chr9 8014497 C-A Homo INTERGENIC
SBS Chr9 20231570 A-G Hetero INTERGENIC
SBS Chr10 1893541 T-C Hetero INTERGENIC
SBS Chr10 13785411 A-G Homo INTRON
SBS Chr10 22969039 A-G Hetero INTERGENIC
SBS Chr11 5930359 C-T Homo INTRON
SBS Chr11 29461317 C-T Hetero INTERGENIC
SBS Chr12 8822817 G-A Homo INTERGENIC
SBS Chr12 13114733 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g109400
SBS Chr12 14383022 G-C Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2189001 2220000 30999 6
Deletion Chr4 3351474 3351483 9
Deletion Chr2 3826001 4010000 183999 23
Deletion Chr10 6179143 6179144 1
Deletion Chr5 6804368 6804369 1
Deletion Chr7 9661001 9684000 22999 OsKitaake07g096900
Deletion Chr5 11213130 11213132 2
Deletion Chr9 12180347 12180352 5
Deletion Chr7 12673939 12673943 4
Deletion Chr7 19367096 19367097 1
Deletion Chr4 19433001 19450000 16999 OsKitaake04g099601
Deletion Chr7 19801449 19801450 1
Deletion Chr4 20651275 20651277 2
Deletion Chr12 20699015 20699021 6 OsKitaake12g161300
Deletion Chr7 21376827 21376828 1 OsKitaake07g177600
Deletion Chr7 21534983 21534985 2
Deletion Chr4 22354001 22363000 8999 OsKitaake04g130700
Deletion Chr10 23581731 23581734 3
Deletion Chr12 26723647 26723648 1
Deletion Chr3 27625501 27625502 1
Deletion Chr6 30916001 31031000 114999 17
Deletion Chr1 44099001 44235000 135999 23

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 3769690 3769693 2
Insertion Chr3 6726470 6726473 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 21574554 22127048

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 21573871 Chr1 44258297 OsKitaake01g494600
Translocation Chr8 22127025 Chr1 44102044
Translocation Chr6 30916233 Chr3 37589773

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4293161	C-G	Hetero	INTERGENIC
SBS	Chr1	4293162	A-G	Hetero	INTERGENIC
SBS	Chr1	42902399	G-A	Homo	INTERGENIC
SBS	Chr2	20211397	T-C	Homo	INTERGENIC
SBS	Chr2	23892493	G-C	Hetero	UTR_3_PRIME
SBS	Chr2	36146704	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g381700
SBS	Chr3	1545236	T-C	Hetero	INTERGENIC
SBS	Chr3	5887868	T-G	Hetero	INTERGENIC
SBS	Chr3	7158417	T-A	Homo	STOP_GAINED	OsKitaake03g099700
SBS	Chr3	10497903	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	16998731	G-A	Hetero	INTERGENIC
SBS	Chr4	3194198	G-A	Hetero	INTERGENIC
SBS	Chr4	12820215	T-G	Hetero	INTERGENIC
SBS	Chr4	22367503	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	9241172	A-G	Homo	INTERGENIC
SBS	Chr6	14937742	A-T	Hetero	INTERGENIC
SBS	Chr6	17600797	G-A	Homo	INTERGENIC
SBS	Chr6	18803229	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	18867540	A-G	Homo	INTERGENIC
SBS	Chr8	8964243	A-C	Hetero	INTERGENIC
SBS	Chr8	18328342	A-T	Hetero	INTRON
SBS	Chr8	21378203	T-C	Hetero	INTERGENIC
SBS	Chr9	6330855	G-A	Hetero	UTR_5_PRIME
SBS	Chr9	7063526	C-T	Hetero	INTERGENIC
SBS	Chr9	8014497	C-A	Homo	INTERGENIC
SBS	Chr9	20231570	A-G	Hetero	INTERGENIC
SBS	Chr10	1893541	T-C	Hetero	INTERGENIC
SBS	Chr10	13785411	A-G	Homo	INTRON
SBS	Chr10	22969039	A-G	Hetero	INTERGENIC
SBS	Chr11	5930359	C-T	Homo	INTRON
SBS	Chr11	29461317	C-T	Hetero	INTERGENIC
SBS	Chr12	8822817	G-A	Homo	INTERGENIC
SBS	Chr12	13114733	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g109400
SBS	Chr12	14383022	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2189001	2220000	30999	6
Deletion	Chr4	3351474	3351483	9
Deletion	Chr2	3826001	4010000	183999	23
Deletion	Chr10	6179143	6179144	1
Deletion	Chr5	6804368	6804369	1
Deletion	Chr7	9661001	9684000	22999	OsKitaake07g096900
Deletion	Chr5	11213130	11213132	2
Deletion	Chr9	12180347	12180352	5
Deletion	Chr7	12673939	12673943	4
Deletion	Chr7	19367096	19367097	1
Deletion	Chr4	19433001	19450000	16999	OsKitaake04g099601
Deletion	Chr7	19801449	19801450	1
Deletion	Chr4	20651275	20651277	2
Deletion	Chr12	20699015	20699021	6	OsKitaake12g161300
Deletion	Chr7	21376827	21376828	1	OsKitaake07g177600
Deletion	Chr7	21534983	21534985	2
Deletion	Chr4	22354001	22363000	8999	OsKitaake04g130700
Deletion	Chr10	23581731	23581734	3
Deletion	Chr12	26723647	26723648	1
Deletion	Chr3	27625501	27625502	1
Deletion	Chr6	30916001	31031000	114999	17
Deletion	Chr1	44099001	44235000	135999	23

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	21574554	22127048

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes