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Mutant Information

Mutant Name	FN3901-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3901-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18139617 G-A Hetero INTERGENIC
SBS Chr1 18297919 T-C Hetero INTRON
SBS Chr1 31928113 G-A Hetero INTRON
SBS Chr2 4929539 T-C Homo INTERGENIC
SBS Chr2 9467216 A-T Hetero INTERGENIC
SBS Chr2 10381683 G-A Hetero INTERGENIC
SBS Chr2 13177711 C-T Hetero INTERGENIC
SBS Chr2 19097429 C-T Hetero INTERGENIC
SBS Chr2 19662473 G-T Hetero STOP_GAINED OsKitaake02g192100
SBS Chr2 27077748 C-T Hetero INTERGENIC
SBS Chr2 28072810 C-A Hetero SPLICE_SITE_DONOR OsKitaake02g283000
SBS Chr3 15238253 G-A Hetero INTERGENIC
SBS Chr3 30236474 T-A Hetero INTRON
SBS Chr4 23720810 T-A Hetero INTERGENIC
SBS Chr4 23720811 T-A Hetero INTERGENIC
SBS Chr4 23720812 C-A Hetero INTERGENIC
SBS Chr5 27269218 T-A Hetero INTERGENIC
SBS Chr6 6372325 T-C Homo INTRON
SBS Chr6 15176149 C-T Hetero INTERGENIC
SBS Chr6 18272034 C-T Hetero INTERGENIC
SBS Chr7 5777746 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 16372000 G-A Homo INTERGENIC
SBS Chr8 21117759 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g158500
SBS Chr9 3576727 C-T Hetero INTERGENIC
SBS Chr9 3576728 T-A Hetero INTERGENIC
SBS Chr9 9465001 C-A Hetero INTERGENIC
SBS Chr9 9692203 G-T Hetero SYNONYMOUS_CODING
SBS Chr9 11120795 T-C Hetero INTERGENIC
SBS Chr9 13842378 G-T Hetero INTRON
SBS Chr9 14487261 G-A Hetero INTERGENIC
SBS Chr9 14487263 T-G Hetero INTERGENIC
SBS Chr10 9801338 T-G Homo INTERGENIC
SBS Chr10 18960205 G-C Hetero INTERGENIC
SBS Chr10 19147921 A-T Hetero INTERGENIC
SBS Chr11 8662701 C-G Hetero INTERGENIC
SBS Chr12 16211967 G-A Hetero INTERGENIC
SBS Chr12 16211968 T-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 615001 652000 36999 7
Deletion Chr5 5358590 5358593 3
Deletion Chr2 5945194 5945200 6
Deletion Chr3 7110908 7110910 2
Deletion Chr1 9484885 9484886 1
Deletion Chr12 13809153 13809154 1
Deletion Chr4 14628765 14628766 1
Deletion Chr9 19708715 19708719 4
Deletion Chr11 20115101 20115109 8
Deletion Chr10 23946962 23946964 2
Deletion Chr3 26683763 26683765 2
Deletion Chr7 28652947 28652956 9
Deletion Chr1 29628214 29628220 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 30445616 30445624 7
Insertion Chr5 23262244 23262248 3

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 5165837 Chr4 653234 OsKitaake07g063000
Translocation Chr7 5165838 Chr4 652697 OsKitaake07g063000
Translocation Chr8 14170864 Chr4 19669207
Translocation Chr8 14170865 Chr4 19669404

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18139617	G-A	Hetero	INTERGENIC
SBS	Chr1	18297919	T-C	Hetero	INTRON
SBS	Chr1	31928113	G-A	Hetero	INTRON
SBS	Chr2	4929539	T-C	Homo	INTERGENIC
SBS	Chr2	9467216	A-T	Hetero	INTERGENIC
SBS	Chr2	10381683	G-A	Hetero	INTERGENIC
SBS	Chr2	13177711	C-T	Hetero	INTERGENIC
SBS	Chr2	19097429	C-T	Hetero	INTERGENIC
SBS	Chr2	19662473	G-T	Hetero	STOP_GAINED	OsKitaake02g192100
SBS	Chr2	27077748	C-T	Hetero	INTERGENIC
SBS	Chr2	28072810	C-A	Hetero	SPLICE_SITE_DONOR	OsKitaake02g283000
SBS	Chr3	15238253	G-A	Hetero	INTERGENIC
SBS	Chr3	30236474	T-A	Hetero	INTRON
SBS	Chr4	23720810	T-A	Hetero	INTERGENIC
SBS	Chr4	23720811	T-A	Hetero	INTERGENIC
SBS	Chr4	23720812	C-A	Hetero	INTERGENIC
SBS	Chr5	27269218	T-A	Hetero	INTERGENIC
SBS	Chr6	6372325	T-C	Homo	INTRON
SBS	Chr6	15176149	C-T	Hetero	INTERGENIC
SBS	Chr6	18272034	C-T	Hetero	INTERGENIC
SBS	Chr7	5777746	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	16372000	G-A	Homo	INTERGENIC
SBS	Chr8	21117759	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g158500
SBS	Chr9	3576727	C-T	Hetero	INTERGENIC
SBS	Chr9	3576728	T-A	Hetero	INTERGENIC
SBS	Chr9	9465001	C-A	Hetero	INTERGENIC
SBS	Chr9	9692203	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	11120795	T-C	Hetero	INTERGENIC
SBS	Chr9	13842378	G-T	Hetero	INTRON
SBS	Chr9	14487261	G-A	Hetero	INTERGENIC
SBS	Chr9	14487263	T-G	Hetero	INTERGENIC
SBS	Chr10	9801338	T-G	Homo	INTERGENIC
SBS	Chr10	18960205	G-C	Hetero	INTERGENIC
SBS	Chr10	19147921	A-T	Hetero	INTERGENIC
SBS	Chr11	8662701	C-G	Hetero	INTERGENIC
SBS	Chr12	16211967	G-A	Hetero	INTERGENIC
SBS	Chr12	16211968	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	615001	652000	36999	7
Deletion	Chr5	5358590	5358593	3
Deletion	Chr2	5945194	5945200	6
Deletion	Chr3	7110908	7110910	2
Deletion	Chr1	9484885	9484886	1
Deletion	Chr12	13809153	13809154	1
Deletion	Chr4	14628765	14628766	1
Deletion	Chr9	19708715	19708719	4
Deletion	Chr11	20115101	20115109	8
Deletion	Chr10	23946962	23946964	2
Deletion	Chr3	26683763	26683765	2
Deletion	Chr7	28652947	28652956	9
Deletion	Chr1	29628214	29628220	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5165837	Chr4	653234	OsKitaake07g063000
Translocation	Chr7	5165838	Chr4	652697	OsKitaake07g063000
Translocation	Chr8	14170864	Chr4	19669207
Translocation	Chr8	14170865	Chr4	19669404

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes