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| Mutant Information |
|---|
| Mutant Name | FN3939-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3939-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1719970 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 9797759 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 10805114 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 14800064 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 15237482 | G-A | Homo | INTRON | |
| SBS | Chr1 | 24306012 | G-A | Homo | INTRON | |
| SBS | Chr1 | 29614326 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 30322980 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 33652588 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 6515322 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 5197390 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 34814034 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5484090 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 12610820 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 22486077 | C-G | Homo | INTRON | |
| SBS | Chr5 | 3791452 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 8520516 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 14062000 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23806914 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 24731998 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 567525 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 567526 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9994559 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13385896 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15332158 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 26739205 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 3568563 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 18650621 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 25442335 | T-C | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2472567 | 2472580 | 13 | |
| Deletion | Chr12 | 2840001 | 3010000 | 169999 | 16 |
| Deletion | Chr11 | 6363395 | 6363403 | 8 | |
| Deletion | Chr5 | 6756118 | 6756150 | 32 | |
| Deletion | Chr11 | 8354658 | 8354670 | 12 | OsKitaake11g091000 |
| Deletion | Chr12 | 9214319 | 9214328 | 9 | |
| Deletion | Chr11 | 12487231 | 12487240 | 9 | |
| Deletion | Chr10 | 12631281 | 12631286 | 5 | |
| Deletion | Chr6 | 13604754 | 13604755 | 1 | |
| Deletion | Chr4 | 15732511 | 15732515 | 4 | |
| Deletion | Chr3 | 21958301 | 21958302 | 1 | |
| Deletion | Chr1 | 24020001 | 24093000 | 72999 | 7 |
| Deletion | Chr4 | 24769459 | 24769462 | 3 | |
| Deletion | Chr11 | 24845481 | 24845482 | 1 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 2241384 | 2661979 | 2 |
| Inversion | Chr12 | 2241390 | 2661986 | 2 |
| Inversion | Chr10 | 12607400 | 13525262 | OsKitaake10g081500 |
| Inversion | Chr10 | 12607413 | 13525264 | OsKitaake10g081500 |
| Inversion | Chr1 | 36774968 | 37365254 | OsKitaake01g399000 |
| Inversion | Chr1 | 36774984 | 37365327 | OsKitaake01g399000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 29052614 | Chr1 | 22330315 | 2 |
| Translocation | Chr4 | 29052949 | Chr1 | 22330303 | 2 |