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Mutant Information

Mutant Name	FN3945-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3945-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4304317 T-A Hetero UTR_3_PRIME
SBS Chr1 4304318 C-T Hetero UTR_3_PRIME
SBS Chr1 26036046 T-C Hetero INTERGENIC
SBS Chr1 41252873 A-G Hetero INTRON
SBS Chr2 3829599 C-T Homo INTERGENIC
SBS Chr2 19619359 A-G Hetero INTERGENIC
SBS Chr3 8959433 C-A Hetero INTRON
SBS Chr3 20578400 A-G Homo INTERGENIC
SBS Chr3 25697586 T-C Homo INTRON
SBS Chr4 7616581 C-T Homo INTERGENIC
SBS Chr4 28463280 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 3336414 G-A Hetero INTERGENIC
SBS Chr5 9200655 C-T Hetero INTERGENIC
SBS Chr5 15979515 C-T Homo INTERGENIC
SBS Chr6 13831995 G-A Hetero INTERGENIC
SBS Chr6 20818709 G-A Homo INTERGENIC
SBS Chr6 23538566 T-C Hetero INTERGENIC
SBS Chr7 4818540 T-G Homo UTR_3_PRIME
SBS Chr7 6323502 A-T Homo INTERGENIC
SBS Chr7 26718303 G-A Homo INTERGENIC
SBS Chr8 18436156 A-G Hetero INTERGENIC
SBS Chr9 14080195 G-T Hetero INTERGENIC
SBS Chr9 14829247 A-G Hetero INTERGENIC
SBS Chr10 3839501 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g029100
SBS Chr10 13150860 A-G Hetero INTERGENIC
SBS Chr10 22201543 C-T Hetero INTERGENIC
SBS Chr11 17532526 G-A Homo INTERGENIC
SBS Chr11 24259908 C-A Homo INTERGENIC
SBS Chr11 26136644 T-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2755486 2755651 165
Deletion Chr6 3218036 3218050 14 OsKitaake06g045100
Deletion Chr7 5372849 5372851 2
Deletion Chr6 7486328 7486330 2
Deletion Chr4 8424089 8424090 1
Deletion Chr1 10556286 10556299 13
Deletion Chr12 18206001 18251000 44999 4
Deletion Chr3 21951669 21951671 2
Deletion Chr1 37808750 37808759 9
Deletion Chr1 39330849 39330864 15
Deletion Chr1 39603950 39603961 11
Deletion Chr1 43885170 43885193 23 OsKitaake01g488800

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11265399 11265402 2
Insertion Chr1 38734287 38734295 7
Insertion Chr4 31881585 31881590 4
Insertion Chr5 16987625 16987628 2
Insertion Chr10 13151974 13151976 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 27633336 28016830 OsKitaake05g258500
Inversion Chr5 27664533 28016839 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 7904547 Chr1 41759052 OsKitaake01g456600
Translocation Chr11 17574957 Chr5 27659353 2
Translocation Chr11 17574962 Chr5 27633348 OsKitaake11g137700
Translocation Chr12 18208990 Chr3 6840220 OsKitaake03g097000
Translocation Chr12 18249451 Chr5 27664526 OsKitaake05g252700
Translocation Chr5 27659356 Chr3 7823147 OsKitaake05g252600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4304317	T-A	Hetero	UTR_3_PRIME
SBS	Chr1	4304318	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	26036046	T-C	Hetero	INTERGENIC
SBS	Chr1	41252873	A-G	Hetero	INTRON
SBS	Chr2	3829599	C-T	Homo	INTERGENIC
SBS	Chr2	19619359	A-G	Hetero	INTERGENIC
SBS	Chr3	8959433	C-A	Hetero	INTRON
SBS	Chr3	20578400	A-G	Homo	INTERGENIC
SBS	Chr3	25697586	T-C	Homo	INTRON
SBS	Chr4	7616581	C-T	Homo	INTERGENIC
SBS	Chr4	28463280	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	3336414	G-A	Hetero	INTERGENIC
SBS	Chr5	9200655	C-T	Hetero	INTERGENIC
SBS	Chr5	15979515	C-T	Homo	INTERGENIC
SBS	Chr6	13831995	G-A	Hetero	INTERGENIC
SBS	Chr6	20818709	G-A	Homo	INTERGENIC
SBS	Chr6	23538566	T-C	Hetero	INTERGENIC
SBS	Chr7	4818540	T-G	Homo	UTR_3_PRIME
SBS	Chr7	6323502	A-T	Homo	INTERGENIC
SBS	Chr7	26718303	G-A	Homo	INTERGENIC
SBS	Chr8	18436156	A-G	Hetero	INTERGENIC
SBS	Chr9	14080195	G-T	Hetero	INTERGENIC
SBS	Chr9	14829247	A-G	Hetero	INTERGENIC
SBS	Chr10	3839501	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g029100
SBS	Chr10	13150860	A-G	Hetero	INTERGENIC
SBS	Chr10	22201543	C-T	Hetero	INTERGENIC
SBS	Chr11	17532526	G-A	Homo	INTERGENIC
SBS	Chr11	24259908	C-A	Homo	INTERGENIC
SBS	Chr11	26136644	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2755486	2755651	165
Deletion	Chr6	3218036	3218050	14	OsKitaake06g045100
Deletion	Chr7	5372849	5372851	2
Deletion	Chr6	7486328	7486330	2
Deletion	Chr4	8424089	8424090	1
Deletion	Chr1	10556286	10556299	13
Deletion	Chr12	18206001	18251000	44999	4
Deletion	Chr3	21951669	21951671	2
Deletion	Chr1	37808750	37808759	9
Deletion	Chr1	39330849	39330864	15
Deletion	Chr1	39603950	39603961	11
Deletion	Chr1	43885170	43885193	23	OsKitaake01g488800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	27633336	28016830	OsKitaake05g258500
Inversion	Chr5	27664533	28016839	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes