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Mutant Information

Mutant Name	FN3956-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3956-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25165380 G-A Hetero INTERGENIC
SBS Chr2 16975270 G-A Homo INTERGENIC
SBS Chr4 6537625 T-C Homo INTERGENIC
SBS Chr4 18381982 G-A Homo INTERGENIC
SBS Chr4 25209253 C-T Homo UTR_3_PRIME
SBS Chr5 4754382 T-C Hetero INTERGENIC
SBS Chr5 19526443 G-A Homo INTERGENIC
SBS Chr5 22624562 T-A Homo START_GAINED
SBS Chr6 9809215 C-T Hetero INTERGENIC
SBS Chr6 12769589 A-T Hetero INTERGENIC
SBS Chr6 15527732 T-C Hetero INTERGENIC
SBS Chr6 30940008 T-A Homo INTERGENIC
SBS Chr7 7816385 C-A Homo SYNONYMOUS_CODING
SBS Chr7 17151501 T-C Homo INTERGENIC
SBS Chr7 26700775 A-T Hetero INTERGENIC
SBS Chr8 7395113 G-A Hetero INTERGENIC
SBS Chr8 13644463 C-T Hetero INTERGENIC
SBS Chr8 13644465 C-A Hetero INTERGENIC
SBS Chr9 9215546 G-A Homo NON_SYNONYMOUS_CODING OsKitaake09g055000
SBS Chr10 16088959 G-A Hetero INTERGENIC
SBS Chr10 16908528 G-A Hetero INTRON
SBS Chr11 3874354 A-T Hetero INTERGENIC
SBS Chr11 4586570 G-C Hetero INTERGENIC
SBS Chr11 8382889 C-T Hetero UTR_5_PRIME
SBS Chr11 9042024 G-A Hetero INTERGENIC
SBS Chr12 14132462 G-T Hetero INTERGENIC
SBS Chr12 16747457 A-T Hetero INTERGENIC
SBS Chr12 19284165 G-A Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3224287 3224289 2
Deletion Chr3 10033013 10033014 1 OsKitaake03g137300
Deletion Chr6 10704896 10704903 7
Deletion Chr8 13713489 13713491 2
Deletion Chr7 17083704 17083729 25
Deletion Chr9 20578473 20578474 1
Deletion Chr9 21510908 21510920 12
Deletion Chr4 24277893 24277897 4
Deletion Chr3 27357001 27368000 10999 5
Deletion Chr4 31549804 31549809 5 OsKitaake04g248400
Deletion Chr1 36126027 36126042 15

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 31694539 31694544 4
Insertion Chr6 6847641 6847644 2
Insertion Chr3 9084393 9084398 4
Insertion Chr4 18297099 18297101 1
Insertion Chr7 11992111 11992113 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 22518753 23320331 OsKitaake03g250900
Inversion Chr3 23320470 23939283 OsKitaake03g250900
Inversion Chr3 27368896 27380240 OsKitaake03g282300
Inversion Chr1 41753108 41820299 2
Inversion Chr1 41753117 41820301 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 3810839 Chr3 10408508 OsKitaake03g142300
Translocation Chr5 10542490 Chr1 19377970
Translocation Chr9 13489597 Chr2 19393681 OsKitaake09g089866
Translocation Chr9 13489604 Chr2 19386230 OsKitaake09g089866
Translocation Chr4 14394290 Chr1 26784385

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25165380	G-A	Hetero	INTERGENIC
SBS	Chr2	16975270	G-A	Homo	INTERGENIC
SBS	Chr4	6537625	T-C	Homo	INTERGENIC
SBS	Chr4	18381982	G-A	Homo	INTERGENIC
SBS	Chr4	25209253	C-T	Homo	UTR_3_PRIME
SBS	Chr5	4754382	T-C	Hetero	INTERGENIC
SBS	Chr5	19526443	G-A	Homo	INTERGENIC
SBS	Chr5	22624562	T-A	Homo	START_GAINED
SBS	Chr6	9809215	C-T	Hetero	INTERGENIC
SBS	Chr6	12769589	A-T	Hetero	INTERGENIC
SBS	Chr6	15527732	T-C	Hetero	INTERGENIC
SBS	Chr6	30940008	T-A	Homo	INTERGENIC
SBS	Chr7	7816385	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	17151501	T-C	Homo	INTERGENIC
SBS	Chr7	26700775	A-T	Hetero	INTERGENIC
SBS	Chr8	7395113	G-A	Hetero	INTERGENIC
SBS	Chr8	13644463	C-T	Hetero	INTERGENIC
SBS	Chr8	13644465	C-A	Hetero	INTERGENIC
SBS	Chr9	9215546	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g055000
SBS	Chr10	16088959	G-A	Hetero	INTERGENIC
SBS	Chr10	16908528	G-A	Hetero	INTRON
SBS	Chr11	3874354	A-T	Hetero	INTERGENIC
SBS	Chr11	4586570	G-C	Hetero	INTERGENIC
SBS	Chr11	8382889	C-T	Hetero	UTR_5_PRIME
SBS	Chr11	9042024	G-A	Hetero	INTERGENIC
SBS	Chr12	14132462	G-T	Hetero	INTERGENIC
SBS	Chr12	16747457	A-T	Hetero	INTERGENIC
SBS	Chr12	19284165	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3224287	3224289	2
Deletion	Chr3	10033013	10033014	1	OsKitaake03g137300
Deletion	Chr6	10704896	10704903	7
Deletion	Chr8	13713489	13713491	2
Deletion	Chr7	17083704	17083729	25
Deletion	Chr9	20578473	20578474	1
Deletion	Chr9	21510908	21510920	12
Deletion	Chr4	24277893	24277897	4
Deletion	Chr3	27357001	27368000	10999	5
Deletion	Chr4	31549804	31549809	5	OsKitaake04g248400
Deletion	Chr1	36126027	36126042	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	22518753	23320331	OsKitaake03g250900
Inversion	Chr3	23320470	23939283	OsKitaake03g250900
Inversion	Chr3	27368896	27380240	OsKitaake03g282300
Inversion	Chr1	41753108	41820299	2
Inversion	Chr1	41753117	41820301	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes