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| Mutant Information |
|---|
| Mutant Name | FN400-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN400-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 29265233 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 6241005 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 10390390 | A-C | Hetero | INTRON | |
| SBS | Chr3 | 15334229 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15334230 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23924103 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4136352 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 8848490 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14334518 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31984414 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 5675642 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14900480 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 28218649 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 29244554 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 13835474 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 9984087 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 17338523 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 28487845 | G-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 15912923 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 18175631 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr10 | 18678758 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 22311405 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 22311406 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13974943 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 15515944 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 21995477 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 29477153 | G-C | Hetero | INTRON |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 1750244 | 1750250 | 6 | |
| Deletion | Chr7 | 2554009 | 2554015 | 6 | |
| Deletion | Chr4 | 9376782 | 9376785 | 3 | |
| Deletion | Chr7 | 13724001 | 13730000 | 5999 | |
| Deletion | Chr2 | 19716628 | 19716632 | 4 | |
| Deletion | Chr4 | 20679905 | 20679908 | 3 | |
| Deletion | Chr3 | 22038053 | 22038058 | 5 | |
| Deletion | Chr2 | 22248494 | 22248497 | 3 | OsKitaake02g215600 |
| Deletion | Chr2 | 22459079 | 22459088 | 9 | |
| Deletion | Chr4 | 30789001 | 30839000 | 49999 | 15 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 24332900 | 24332905 | 4 | |
| Insertion | Chr3 | 23767100 | 23767103 | 2 | |
| Insertion | Chr4 | 4771841 | 4771843 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 1375176 | 1899999 | |
| Inversion | Chr9 | 9927684 | 10091991 | |
| Inversion | Chr9 | 10054934 | 10091997 | OsKitaake09g061300 |