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| Mutant Information |
|---|
| Mutant Name | FN4001-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4001-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 30610402 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 1234468 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31155545 | T-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 4625739 | A-T | Homo | INTRON | |
| SBS | Chr3 | 10326120 | A-T | Homo | INTRON | |
| SBS | Chr3 | 11143596 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 12289852 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 24077292 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 28112881 | A-T | Homo | INTRON | |
| SBS | Chr4 | 5423146 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5510518 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 14933525 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 20728878 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 25949314 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 14498101 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr6 | 109379 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 3680468 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 9885735 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 12312222 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14394477 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 18950037 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 12877781 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 16199860 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 4169858 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 7414037 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8152849 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12297280 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27201613 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 28024715 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14920447 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 17051101 | T-G | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1044950 | 1044952 | 2 | |
| Deletion | Chr9 | 1393554 | 1393555 | 1 | |
| Deletion | Chr11 | 5208001 | 5340000 | 131999 | 15 |
| Deletion | Chr2 | 6113063 | 6113068 | 5 | OsKitaake02g083200 |
| Deletion | Chr3 | 8868858 | 8868863 | 5 | |
| Deletion | Chr2 | 14967001 | 15003000 | 35999 | OsKitaake02g157600 |
| Deletion | Chr2 | 19322001 | 19576000 | 253999 | 24 |
| Deletion | Chr5 | 20133037 | 20133039 | 2 | |
| Deletion | Chr4 | 21202180 | 21202183 | 3 | |
| Deletion | Chr6 | 24936001 | 24943000 | 6999 | OsKitaake06g221700 |
| Deletion | Chr3 | 35817273 | 35817274 | 1 | OsKitaake03g394300 |
| Deletion | Chr2 | 36793985 | 36793988 | 3 | OsKitaake02g393100 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 1825659 | 1825664 | 4 | |
| Insertion | Chr8 | 4609436 | 4609439 | 2 | |
| Insertion | Chr4 | 8384258 | 8384260 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 11175714 | 11204775 | 2 |
| Inversion | Chr3 | 11175719 | 11204821 | 2 |
| Inversion | Chr4 | 20190171 | 20927939 | 2 |
| Inversion | Chr4 | 20190174 | 20927965 | 2 |