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| Mutant Information |
|---|
| Mutant Name | FN4040-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4040-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22324776 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 16299839 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 13132595 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18420512 | G-A | Homo | INTRON | |
| SBS | Chr4 | 18034756 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 3649693 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 4146489 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 21153891 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 23125544 | G-T | Hetero | INTRON | |
| SBS | Chr5 | 23564654 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 26369725 | C-T | Homo | STOP_GAINED | OsKitaake05g233000 |
| SBS | Chr6 | 24071254 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24071256 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 1216494 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14426433 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 16854115 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 5399641 | G-T | Homo | INTRON | |
| SBS | Chr9 | 20698467 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 4448032 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g033125 |
| SBS | Chr10 | 9256198 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 10088627 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 10088628 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 12970075 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 22566630 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 5083029 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 11796137 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24259183 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 24337151 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 10208384 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 15640035 | C-G | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 186531 | 186539 | 8 | |
| Deletion | Chr5 | 3761732 | 3761738 | 6 | |
| Deletion | Chr10 | 10289566 | 10289571 | 5 | |
| Deletion | Chr2 | 14645289 | 14645290 | 1 | |
| Deletion | Chr9 | 15900200 | 15900217 | 17 | |
| Deletion | Chr1 | 18340517 | 18340536 | 19 | |
| Deletion | Chr9 | 20366238 | 20366244 | 6 | OsKitaake09g171300 |
| Deletion | Chr11 | 21891001 | 21903000 | 11999 | 3 |
| Deletion | Chr5 | 22475001 | 22537000 | 61999 | 10 |
| Deletion | Chr5 | 22544001 | 22602000 | 57999 | 9 |
| Deletion | Chr7 | 28733168 | 28733170 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 15121259 | 15121263 | 3 | |
| Insertion | Chr11 | 3383179 | 3383181 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 1150312 | 1605790 | OsKitaake12g024400 |
| Inversion | Chr12 | 1150321 | 1605823 | OsKitaake12g024400 |
| Inversion | Chr11 | 21630099 | 21891102 | OsKitaake11g173100 |
| Inversion | Chr11 | 21630116 | 21903210 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 1277226 | Chr5 | 24098810 | 2 |
| Translocation | Chr10 | 13260866 | Chr4 | 9669275 |