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Mutant Information

Mutant Name	FN4078-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4078-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 28255013 G-C Homo INTERGENIC
SBS Chr3 7306189 C-T Homo INTRON
SBS Chr3 9426606 A-G Hetero INTRON
SBS Chr3 14208330 T-C Homo INTERGENIC
SBS Chr3 34453248 G-C Hetero INTERGENIC
SBS Chr3 35430222 C-A Hetero INTERGENIC
SBS Chr4 199456 A-T Hetero INTRON
SBS Chr4 730331 T-C Hetero INTERGENIC
SBS Chr4 6537913 G-A Homo INTERGENIC
SBS Chr4 6742857 A-G Homo INTERGENIC
SBS Chr4 13649428 G-A Homo INTERGENIC
SBS Chr4 21147045 G-A Hetero INTERGENIC
SBS Chr4 22773056 A-T Homo INTERGENIC
SBS Chr4 22791796 G-A Homo INTERGENIC
SBS Chr4 28726237 G-T Homo INTERGENIC
SBS Chr4 31722667 A-C Hetero INTERGENIC
SBS Chr4 36388099 A-G Hetero INTERGENIC
SBS Chr5 5667425 G-T Homo INTERGENIC
SBS Chr5 17107007 T-G Homo UTR_3_PRIME
SBS Chr6 2716301 A-T Homo INTERGENIC
SBS Chr6 18436592 C-A Hetero INTERGENIC
SBS Chr7 2909345 T-C Hetero INTERGENIC
SBS Chr7 26142385 A-G Homo INTERGENIC
SBS Chr8 8581098 G-A Homo INTERGENIC
SBS Chr8 12073177 C-G Hetero INTERGENIC
SBS Chr10 6860379 A-G Hetero INTERGENIC
SBS Chr10 19129185 T-A Hetero INTERGENIC
SBS Chr10 21400855 G-A Homo INTERGENIC
SBS Chr11 4115623 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g056000
SBS Chr11 5626464 T-A Hetero INTERGENIC
SBS Chr11 8605005 C-A Homo INTERGENIC
SBS Chr11 16475468 G-T Hetero INTERGENIC
SBS Chr11 17536959 C-T Hetero INTERGENIC
SBS Chr11 19587251 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g152600
SBS Chr11 21095637 T-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 97496 97500 4
Deletion Chr12 1623700 1623708 8
Deletion Chr12 6415881 6415882 1
Deletion Chr10 17096001 17233000 136999 7
Deletion Chr5 21699485 21699487 2
Deletion Chr8 21872001 21976000 103999 13
Deletion Chr4 29443595 29443597 2
Deletion Chr3 33240001 33468000 227999 34
Deletion Chr1 37738039 37738041 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 31956570 31956573 2
Insertion Chr5 7864657 7864660 2
Insertion Chr5 10944141 10944143 1

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 2344952 2641704
Inversion Chr2 2344956 2641706
Inversion Chr10 18087991 18423672
Inversion Chr10 18182182 18422855 2
Inversion Chr5 28601121 29515637 OsKitaake05g280400
Inversion Chr5 28601126 29515654 OsKitaake05g280400
Inversion Chr3 32411603 32666648 OsKitaake03g345800
Inversion Chr3 32429886 32666635 2
Inversion Chr1 36911037 37081927 OsKitaake01g395200
Inversion Chr1 36911043 37081928 OsKitaake01g395200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	28255013	G-C	Homo	INTERGENIC
SBS	Chr3	7306189	C-T	Homo	INTRON
SBS	Chr3	9426606	A-G	Hetero	INTRON
SBS	Chr3	14208330	T-C	Homo	INTERGENIC
SBS	Chr3	34453248	G-C	Hetero	INTERGENIC
SBS	Chr3	35430222	C-A	Hetero	INTERGENIC
SBS	Chr4	199456	A-T	Hetero	INTRON
SBS	Chr4	730331	T-C	Hetero	INTERGENIC
SBS	Chr4	6537913	G-A	Homo	INTERGENIC
SBS	Chr4	6742857	A-G	Homo	INTERGENIC
SBS	Chr4	13649428	G-A	Homo	INTERGENIC
SBS	Chr4	21147045	G-A	Hetero	INTERGENIC
SBS	Chr4	22773056	A-T	Homo	INTERGENIC
SBS	Chr4	22791796	G-A	Homo	INTERGENIC
SBS	Chr4	28726237	G-T	Homo	INTERGENIC
SBS	Chr4	31722667	A-C	Hetero	INTERGENIC
SBS	Chr4	36388099	A-G	Hetero	INTERGENIC
SBS	Chr5	5667425	G-T	Homo	INTERGENIC
SBS	Chr5	17107007	T-G	Homo	UTR_3_PRIME
SBS	Chr6	2716301	A-T	Homo	INTERGENIC
SBS	Chr6	18436592	C-A	Hetero	INTERGENIC
SBS	Chr7	2909345	T-C	Hetero	INTERGENIC
SBS	Chr7	26142385	A-G	Homo	INTERGENIC
SBS	Chr8	8581098	G-A	Homo	INTERGENIC
SBS	Chr8	12073177	C-G	Hetero	INTERGENIC
SBS	Chr10	6860379	A-G	Hetero	INTERGENIC
SBS	Chr10	19129185	T-A	Hetero	INTERGENIC
SBS	Chr10	21400855	G-A	Homo	INTERGENIC
SBS	Chr11	4115623	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g056000
SBS	Chr11	5626464	T-A	Hetero	INTERGENIC
SBS	Chr11	8605005	C-A	Homo	INTERGENIC
SBS	Chr11	16475468	G-T	Hetero	INTERGENIC
SBS	Chr11	17536959	C-T	Hetero	INTERGENIC
SBS	Chr11	19587251	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g152600
SBS	Chr11	21095637	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	97496	97500	4
Deletion	Chr12	1623700	1623708	8
Deletion	Chr12	6415881	6415882	1
Deletion	Chr10	17096001	17233000	136999	7
Deletion	Chr5	21699485	21699487	2
Deletion	Chr8	21872001	21976000	103999	13
Deletion	Chr4	29443595	29443597	2
Deletion	Chr3	33240001	33468000	227999	34
Deletion	Chr1	37738039	37738041	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	2344952	2641704
Inversion	Chr2	2344956	2641706
Inversion	Chr10	18087991	18423672
Inversion	Chr10	18182182	18422855	2
Inversion	Chr5	28601121	29515637	OsKitaake05g280400
Inversion	Chr5	28601126	29515654	OsKitaake05g280400
Inversion	Chr3	32411603	32666648	OsKitaake03g345800
Inversion	Chr3	32429886	32666635	2
Inversion	Chr1	36911037	37081927	OsKitaake01g395200
Inversion	Chr1	36911043	37081928	OsKitaake01g395200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes