Search Kitaake

Mutant Information

Mutant Name	FN408-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN408-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1913666 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g023100
SBS Chr1 2071318 C-T Hetero INTRON
SBS Chr1 2602329 C-T Hetero INTRON
SBS Chr2 31035276 T-A Hetero INTERGENIC
SBS Chr3 9192209 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g125600
SBS Chr3 9192210 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g125600
SBS Chr3 34880489 A-T Hetero INTERGENIC
SBS Chr4 12270854 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g059500
SBS Chr4 20051216 T-A Homo INTRON
SBS Chr5 15349924 T-A Hetero INTERGENIC
SBS Chr6 3504962 T-C Hetero INTRON
SBS Chr6 29510267 A-G Hetero UTR_3_PRIME
SBS Chr6 29513835 A-G Hetero INTRON
SBS Chr6 29513837 A-T Hetero INTRON
SBS Chr7 29393645 G-A Hetero UTR_3_PRIME
SBS Chr8 20517450 G-T Homo INTERGENIC
SBS Chr8 20517451 T-G Homo INTERGENIC
SBS Chr9 15185796 T-C Homo INTERGENIC
SBS Chr10 8848215 C-G Hetero INTERGENIC
SBS Chr10 12676948 T-A Homo INTERGENIC
SBS Chr11 14697973 T-G Hetero INTERGENIC
SBS Chr11 19651094 A-T Hetero INTRON
SBS Chr12 7584653 G-A Hetero INTERGENIC
SBS Chr12 13565944 T-C Homo INTERGENIC
SBS Chr12 24971600 G-C Homo INTRON

Deletions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 89043 89396 353
Deletion Chr2 351001 359000 7999

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38734287 38734290 2
Insertion Chr6 27635449 27635452 2
Insertion Chr2 13865666 13865669 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 1781156 1920264 OsKitaake05g020701
Inversion Chr5 1781164 1920269 OsKitaake05g020701
Inversion Chr7 13353264 14057010
Inversion Chr7 13353275 14057019
Inversion Chr1 38552772 38757473 2
Inversion Chr1 38552776 38759927 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 10389750 Chr4 36343625 OsKitaake06g117600
Translocation Chr6 24680636 Chr4 36343622
Translocation Chr6 24680664 Chr4 36343626

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1913666	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g023100
SBS	Chr1	2071318	C-T	Hetero	INTRON
SBS	Chr1	2602329	C-T	Hetero	INTRON
SBS	Chr2	31035276	T-A	Hetero	INTERGENIC
SBS	Chr3	9192209	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g125600
SBS	Chr3	9192210	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g125600
SBS	Chr3	34880489	A-T	Hetero	INTERGENIC
SBS	Chr4	12270854	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g059500
SBS	Chr4	20051216	T-A	Homo	INTRON
SBS	Chr5	15349924	T-A	Hetero	INTERGENIC
SBS	Chr6	3504962	T-C	Hetero	INTRON
SBS	Chr6	29510267	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	29513835	A-G	Hetero	INTRON
SBS	Chr6	29513837	A-T	Hetero	INTRON
SBS	Chr7	29393645	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	20517450	G-T	Homo	INTERGENIC
SBS	Chr8	20517451	T-G	Homo	INTERGENIC
SBS	Chr9	15185796	T-C	Homo	INTERGENIC
SBS	Chr10	8848215	C-G	Hetero	INTERGENIC
SBS	Chr10	12676948	T-A	Homo	INTERGENIC
SBS	Chr11	14697973	T-G	Hetero	INTERGENIC
SBS	Chr11	19651094	A-T	Hetero	INTRON
SBS	Chr12	7584653	G-A	Hetero	INTERGENIC
SBS	Chr12	13565944	T-C	Homo	INTERGENIC
SBS	Chr12	24971600	G-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	89043	89396	353
Deletion	Chr2	351001	359000	7999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1781156	1920264	OsKitaake05g020701
Inversion	Chr5	1781164	1920269	OsKitaake05g020701
Inversion	Chr7	13353264	14057010
Inversion	Chr7	13353275	14057019
Inversion	Chr1	38552772	38757473	2
Inversion	Chr1	38552776	38759927	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes