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| Mutant Information |
|---|
| Mutant Name | FN409-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN409-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9941165 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 12396843 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 28675895 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 11594057 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 2719181 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 14385591 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 14475814 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17399665 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g214400 |
| SBS | Chr3 | 19223374 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 22728290 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 36784365 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 22315115 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 25530769 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g175900 |
| SBS | Chr5 | 574825 | T-A | Homo | INTRON | |
| SBS | Chr5 | 2263438 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 7092883 | T-G | Homo | INTERGENIC | |
| SBS | Chr5 | 10073486 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 13283870 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 19978513 | C-G | Hetero | INTRON | |
| SBS | Chr5 | 22029061 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 27660745 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 20288944 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 28670815 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 1120748 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6661787 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 535077 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 11836269 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14023438 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 2095240 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 20381943 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 16640049 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 2249984 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 2576671 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g037200 |
| SBS | Chr11 | 6802223 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 17497389 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 1432583 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 23616278 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g189700 |
| SBS | Chr12 | 24764808 | C-T | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 75269 | 75271 | 2 | OsKitaake05g000700 |
| Deletion | Chr6 | 4254605 | 4254610 | 5 | |
| Deletion | Chr7 | 8082981 | 8082986 | 5 | |
| Deletion | Chr2 | 14419534 | 14419539 | 5 | |
| Deletion | Chr10 | 22860885 | 22860887 | 2 | |
| Deletion | Chr4 | 29501001 | 29509000 | 7999 | 3 |
| Deletion | Chr5 | 30226057 | 30226409 | 352 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 22690806 | 22690808 | 1 | |
| Insertion | Chr5 | 12965974 | 12965976 | 1 | OsKitaake05g100400  |
| Insertion | Chr5 | 29939081 | 29939084 | 2 | |
| Insertion | Chr8 | 13240636 | 13240647 | 10 |
Inversions: 163
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 31209 | 31378 | OsKitaake12g000300 |
| Inversion | Chr12 | 76470 | 76599 | OsKitaake12g000900 |
| Inversion | Chr12 | 79769 | 80047 | OsKitaake12g000900 |
| Inversion | Chr5 | 85939 | 86108 | OsKitaake05g000900 |
| Inversion | Chr6 | 409512 | 409652 | |
| Inversion | Chr8 | 688943 | 689083 | OsKitaake08g009900 |
| Inversion | Chr4 | 1210637 | 1210821 | OsKitaake04g009600 |
| Inversion | Chr11 | 1304332 | 1304453 | |
| Inversion | Chr7 | 2254946 | 2255128 | OsKitaake07g031500 |
| Inversion | Chr11 | 2301334 | 2301533 | OsKitaake11g032900 |
| Inversion | Chr9 | 2634502 | 2634626 | |
| Inversion | Chr12 | 2695827 | 2696013 | OsKitaake12g040000 |
| Inversion | Chr2 | 2798704 | 2798810 | |
| Inversion | Chr10 | 2906251 | 2906393 | OsKitaake10g023800 |
| Inversion | Chr6 | 3232744 | 3233053 | OsKitaake06g045300 |
| Inversion | Chr1 | 3500830 | 3501374 | |
| Inversion | Chr2 | 3600743 | 3600905 | OsKitaake02g052100 |
| Inversion | Chr12 | 3719154 | 3719464 | OsKitaake12g051700 |
| Inversion | Chr5 | 3880099 | 3880260 | OsKitaake05g046500 |
| Inversion | Chr3 | 3998303 | 3998503 | |
| Inversion | Chr3 | 4127973 | 4128262 | OsKitaake03g058800 |
| Inversion | Chr7 | 4206225 | 4206355 | |
| Inversion | Chr12 | 4606881 | 4607002 | |
| Inversion | Chr5 | 4670696 | 4670937 | OsKitaake05g053400 |
| Inversion | Chr2 | 4752198 | 4752310 | OsKitaake02g065500 |
| Inversion | Chr8 | 5206335 | 5206707 | OsKitaake08g056400 |
| Inversion | Chr3 | 5381489 | 5381843 | OsKitaake03g076100 |
| Inversion | Chr2 | 5834768 | 5835003 | OsKitaake02g080400 |
| Inversion | Chr2 | 5899872 | 5900253 | OsKitaake02g081350 |
| Inversion | Chr11 | 6014678 | 6014909 | OsKitaake11g073100 |
| Inversion | Chr4 | 7023978 | 7949301 | |
| Inversion | Chr5 | 7142565 | 7142869 | |
| Inversion | Chr5 | 7181056 | 7181196 | OsKitaake05g072000 |
| Inversion | Chr6 | 7292144 | 7292363 | OsKitaake06g094100 |
| Inversion | Chr5 | 7332560 | 7332912 | |
| Inversion | Chr2 | 7502513 | 7502721 | |
| Inversion | Chr5 | 7703621 | 7703792 | |
| Inversion | Chr5 | 7720808 | 7720942 | OsKitaake05g077000 |
| Inversion | Chr7 | 8281088 | 8281354 | |
| Inversion | Chr12 | 8694105 | 8694294 | |
| Inversion | Chr5 | 9044277 | 9044379 | OsKitaake05g085000 |
| Inversion | Chr9 | 9742907 | 9743072 | |
| Inversion | Chr5 | 9845116 | 9845320 | |
| Inversion | Chr9 | 10057999 | 10058327 | OsKitaake09g061300 |
| Inversion | Chr1 | 10097658 | 10097794 | OsKitaake01g127600 |
| Inversion | Chr9 | 10461133 | 10461365 | |
| Inversion | Chr7 | 10891841 | 10891976 | |
| Inversion | Chr2 | 11047212 | 11047547 | OsKitaake02g129100 |
| Inversion | Chr11 | 11371780 | 11372133 | |
| Inversion | Chr11 | 11532400 | 11532732 | |
| Inversion | Chr11 | 11673859 | 11674056 | |
| Inversion | Chr3 | 11871693 | 11871847 | OsKitaake03g161700 |
| Inversion | Chr10 | 11974951 | 11975176 | OsKitaake10g071300 |
| Inversion | Chr10 | 12006693 | 12006928 | |
| Inversion | Chr10 | 12094554 | 12094749 | |
| Inversion | Chr4 | 12366169 | 12366350 | |
| Inversion | Chr12 | 12522390 | 12522582 | |
| Inversion | Chr12 | 13279537 | 13279829 | |
| Inversion | Chr12 | 13538936 | 13539140 | |
| Inversion | Chr4 | 14059866 | 14060056 | OsKitaake04g067300 |
| Inversion | Chr3 | 14083742 | 14084020 | OsKitaake03g184100 |
| Inversion | Chr7 | 14127957 | 14128128 | |
| Inversion | Chr2 | 14130333 | 14130476 | OsKitaake02g152100 |
| Inversion | Chr3 | 14316874 | 14316991 | |
| Inversion | Chr9 | 14908070 | 14908207 | OsKitaake09g102500 |
| Inversion | Chr2 | 14953410 | 14953533 | |
| Inversion | Chr11 | 15426201 | 15426329 | |
| Inversion | Chr1 | 15446252 | 15446445 | OsKitaake01g168800 |
| Inversion | Chr1 | 15550624 | 15550783 | |
| Inversion | Chr6 | 15724704 | 15724829 | OsKitaake06g153000 |
| Inversion | Chr6 | 15964223 | 15964450 | OsKitaake06g153800 |
| Inversion | Chr8 | 15966585 | 15966885 | OsKitaake08g123100 |
| Inversion | Chr3 | 15975560 | 15975740 | |
| Inversion | Chr8 | 16356498 | 16356816 | |
| Inversion | Chr2 | 16540260 | 16540368 | OsKitaake02g169100 |
| Inversion | Chr8 | 16570133 | 16570351 | OsKitaake08g127300 |
| Inversion | Chr1 | 16684726 | 16684902 | OsKitaake01g177400 |
| Inversion | Chr11 | 16786259 | 16786573 | OsKitaake11g132466 |
| Inversion | Chr12 | 17119895 | 17120058 | |
| Inversion | Chr4 | 17127384 | 17127557 | |
| Inversion | Chr9 | 17242624 | 17242880 | OsKitaake09g129500 |
| Inversion | Chr2 | 17448793 | 17448896 | OsKitaake02g175400 |
| Inversion | Chr4 | 17641676 | 17641927 | OsKitaake04g088300 |
| Inversion | Chr12 | 17849779 | 17849917 | |
| Inversion | Chr4 | 17885636 | 17885801 | |
| Inversion | Chr7 | 18010650 | 18010762 | |
| Inversion | Chr12 | 18256651 | 18256904 | |
| Inversion | Chr3 | 18385945 | 18386140 | |
| Inversion | Chr5 | 18912812 | 18913057 | OsKitaake05g147800 |
| Inversion | Chr11 | 19099053 | 19099184 | |
| Inversion | Chr5 | 19244143 | 19244354 | |
| Inversion | Chr1 | 19319504 | 19319638 | OsKitaake01g193000 |
| Inversion | Chr12 | 19376607 | 19376746 | OsKitaake12g145100 |
| Inversion | Chr2 | 19405729 | 19405902 | |
| Inversion | Chr6 | 19542933 | 19543103 | |
| Inversion | Chr8 | 19595102 | 19595246 | |
| Inversion | Chr5 | 19826355 | 19826610 | OsKitaake05g157400 |
| Inversion | Chr10 | 19847522 | 19847734 | |
| Inversion | Chr12 | 20374589 | 20374871 | OsKitaake12g159000 |
| Inversion | Chr2 | 20511558 | 20511723 | OsKitaake02g199500 |
| Inversion | Chr7 | 21144005 | 21144300 | OsKitaake07g175000 |
| Inversion | Chr4 | 21322085 | 21322298 | OsKitaake04g118400 |
| Inversion | Chr6 | 21324603 | 21324794 | OsKitaake06g189100 |
| Inversion | Chr10 | 21566793 | 21567087 | |
| Inversion | Chr10 | 21946506 | 21946688 | |
| Inversion | Chr6 | 22001120 | 22001287 | |
| Inversion | Chr1 | 22177473 | 22177907 | OsKitaake01g212151 |
| Inversion | Chr9 | 22244096 | 22244377 | OsKitaake09g201000 |
| Inversion | Chr1 | 22253850 | 22254051 | OsKitaake01g212800 |
| Inversion | Chr10 | 22259177 | 22259318 | OsKitaake10g181800 |
| Inversion | Chr5 | 22281484 | 22281588 | OsKitaake05g182100 |
| Inversion | Chr4 | 22341055 | 22341156 | |
| Inversion | Chr3 | 22436954 | 22437170 | |
| Inversion | Chr10 | 22539763 | 22539893 | |
| Inversion | Chr11 | 22890747 | 22890939 | OsKitaake11g181200 |
| Inversion | Chr10 | 23756565 | 23756738 | OsKitaake10g203800 |
| Inversion | Chr7 | 23979416 | 23979569 | |
| Inversion | Chr12 | 24601623 | 24601756 | OsKitaake12g199400 |
| Inversion | Chr11 | 24623057 | 24623169 | |
| Inversion | Chr1 | 24811279 | 24811421 | |
| Inversion | Chr7 | 24860222 | 24860430 | OsKitaake07g222300 |
| Inversion | Chr8 | 24930334 | 24930474 | OsKitaake08g194144 |
| Inversion | Chr4 | 25313891 | 25314244 | OsKitaake04g172100 |
| Inversion | Chr3 | 25882869 | 25883062 | |
| Inversion | Chr5 | 25890764 | 25890954 | |
| Inversion | Chr5 | 26036880 | 26037039 | |
| Inversion | Chr7 | 26228954 | 26229099 | OsKitaake07g240900 |
| Inversion | Chr12 | 26249657 | 26249797 | |
| Inversion | Chr12 | 26357467 | 26357618 | OsKitaake12g219000 |
| Inversion | Chr12 | 27049304 | 27049582 | OsKitaake12g227300 |
| Inversion | Chr5 | 27418695 | 27418865 | |
| Inversion | Chr8 | 27663678 | 27663882 | OsKitaake08g231600 |
| Inversion | Chr4 | 27782076 | 27782210 | OsKitaake04g204900 |
| Inversion | Chr4 | 27823485 | 27823646 | OsKitaake04g205800 |
| Inversion | Chr7 | 28063008 | 28063153 | OsKitaake07g264500 |
| Inversion | Chr6 | 28264379 | 28264557 | |
| Inversion | Chr1 | 28466568 | 28466751 | OsKitaake01g276100 |
| Inversion | Chr7 | 28492129 | 28492246 | |
| Inversion | Chr11 | 28607369 | 28607541 | |
| Inversion | Chr2 | 29038966 | 29039165 | |
| Inversion | Chr11 | 29447859 | 29448183 | |
| Inversion | Chr2 | 29747503 | 29747676 | |
| Inversion | Chr6 | 29860621 | 29860789 | OsKitaake06g279600 |
| Inversion | Chr4 | 29889315 | 29889572 | OsKitaake04g229600 |
| Inversion | Chr6 | 30031515 | 30031694 | OsKitaake06g281200 |
| Inversion | Chr1 | 30974920 | 30975089 | |
| Inversion | Chr2 | 31086159 | 31086389 | OsKitaake02g317400 |
| Inversion | Chr2 | 32055331 | 32055503 | |
| Inversion | Chr1 | 32217606 | 32217763 | |
| Inversion | Chr4 | 32473644 | 32473863 | |
| Inversion | Chr4 | 33261186 | 33261394 | OsKitaake04g271700 |
| Inversion | Chr2 | 33927700 | 33928018 | OsKitaake02g351700 |
| Inversion | Chr2 | 34426516 | 34426768 | OsKitaake02g358000 |
| Inversion | Chr3 | 35368462 | 35368623 | |
| Inversion | Chr2 | 35913153 | 35913289 | |
| Inversion | Chr4 | 35992071 | 35992238 | OsKitaake04g309400 |
| Inversion | Chr2 | 36995441 | 36995602 | OsKitaake02g396700 |
| Inversion | Chr1 | 37436493 | 37436651 | OsKitaake01g399700 |
| Inversion | Chr1 | 40041371 | 40041614 | OsKitaake01g434100 |
| Inversion | Chr1 | 40435797 | 40435907 | |
| Inversion | Chr1 | 41166380 | 41166550 | |
| Inversion | Chr1 | 41977024 | 41977205 | |
| Inversion | Chr1 | 43351854 | 43351976 | OsKitaake01g479700 |