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Mutant Information

Mutant Name	FN414-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN414-S Alignment File
Seed Availability	No
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28400128	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g275000
SBS	Chr2	9546792	T-C	Homo	INTERGENIC
SBS	Chr2	12743201	T-A	Homo	UTR_5_PRIME
SBS	Chr2	12743204	C-A	Homo	UTR_5_PRIME
SBS	Chr2	19528179	G-T	Hetero	INTERGENIC
SBS	Chr2	29818149	T-C	Hetero	INTERGENIC
SBS	Chr2	33113593	A-T	Homo	INTRON
SBS	Chr2	34917825	A-C	Hetero	INTERGENIC
SBS	Chr2	35605234	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr3	210009	G-T	Hetero	INTERGENIC
SBS	Chr3	12026392	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g163500
SBS	Chr3	19354686	A-G	Hetero	INTERGENIC
SBS	Chr3	36564767	A-G	Hetero	INTERGENIC
SBS	Chr4	6315790	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g031700
SBS	Chr4	6315791	C-A	Hetero	STOP_GAINED	OsKitaake04g031700
SBS	Chr4	9018380	C-T	Hetero	INTERGENIC
SBS	Chr4	10308675	G-A	Hetero	INTERGENIC
SBS	Chr4	11292959	G-A	Hetero	INTERGENIC
SBS	Chr4	26338680	A-G	Homo	INTERGENIC
SBS	Chr4	32145262	C-T	Hetero	INTERGENIC
SBS	Chr4	35951786	T-A	Homo	INTERGENIC
SBS	Chr5	7605388	T-A	Hetero	INTERGENIC
SBS	Chr5	9084131	G-C	Hetero	INTERGENIC
SBS	Chr5	11661601	T-G	Hetero	INTERGENIC
SBS	Chr5	14347122	A-T	Hetero	INTRON
SBS	Chr7	17514111	C-T	Hetero	INTERGENIC
SBS	Chr7	26131718	G-A	Homo	INTERGENIC
SBS	Chr7	27648903	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g258000
SBS	Chr8	11057399	C-G	Hetero	INTERGENIC
SBS	Chr9	2048765	A-G	Hetero	INTERGENIC
SBS	Chr9	4386798	G-T	Hetero	INTERGENIC
SBS	Chr10	17640356	G-A	Homo	INTERGENIC
SBS	Chr11	1186097	T-C	Homo	INTERGENIC
SBS	Chr11	11167776	C-T	Hetero	INTERGENIC
SBS	Chr12	7117830	T-A	Hetero	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1196001	1292000	95999	4
Deletion	Chr4	1496151	1496152	1
Deletion	Chr7	2200695	2200696	1
Deletion	Chr6	6557517	6557518	1
Deletion	Chr2	13259447	13259457	10
Deletion	Chr2	14186087	14186094	7
Deletion	Chr2	15325692	15325693	1
Deletion	Chr4	17103919	17103922	3
Deletion	Chr2	19408557	19408563	6
Deletion	Chr2	21198110	21198122	12
Deletion	Chr10	22001077	22001079	2	OsKitaake10g178000
Deletion	Chr12	23378287	23378301	14
Deletion	Chr4	26617243	26617245	2
Deletion	Chr2	33126565	33126566	1
Deletion	Chr1	34862916	34862921	5
Deletion	Chr1	37398176	37398184	8

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8003119	8244671	OsKitaake11g090400
Inversion	Chr11	8003127	8244678	OsKitaake11g090400
Inversion	Chr3	12129316	12677700	OsKitaake03g164200
Inversion	Chr3	12129333	12677707	OsKitaake03g164200
Inversion	Chr2	33109737	33565610
Inversion	Chr2	33109894	33565615

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	12288282	Chr4	29108921	OsKitaake04g220200
Translocation	Chr10	19933392	Chr2	26732911
Translocation	Chr10	19933397	Chr2	26248920	OsKitaake02g260800
Translocation	Chr5	22361569	Chr3	12281345	OsKitaake05g183100
Translocation	Chr5	22376788	Chr3	12281340