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Mutant Information

Mutant Name	FN4272-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4272-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3819267 C-T Hetero INTERGENIC
SBS Chr1 4189029 G-A Hetero UTR_3_PRIME
SBS Chr1 34969165 C-T Homo INTERGENIC
SBS Chr1 39199333 G-A Homo INTERGENIC
SBS Chr2 5125617 C-G Hetero INTERGENIC
SBS Chr2 9294810 G-A Hetero INTERGENIC
SBS Chr2 12360118 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g139700
SBS Chr2 24732806 G-A Hetero UTR_3_PRIME
SBS Chr2 31046109 A-G Hetero INTERGENIC
SBS Chr2 31093311 A-C Hetero INTRON
SBS Chr2 32270039 C-T Hetero INTRON
SBS Chr2 33395629 A-G Hetero INTRON
SBS Chr3 3031235 C-A Hetero INTERGENIC
SBS Chr3 4147766 G-T Hetero INTERGENIC
SBS Chr3 4147770 T-A Hetero INTERGENIC
SBS Chr3 10529190 C-A Hetero SPLICE_SITE_REGION
SBS Chr3 12595474 G-C Hetero INTERGENIC
SBS Chr3 20786645 C-A Homo INTRON
SBS Chr3 20786646 T-C Homo INTRON
SBS Chr3 25153451 C-T Homo INTERGENIC
SBS Chr3 26409942 A-G Homo INTRON
SBS Chr3 27929992 C-T Hetero INTERGENIC
SBS Chr4 200895 A-T Hetero INTERGENIC
SBS Chr4 200898 A-G Hetero INTERGENIC
SBS Chr4 8781551 A-G Hetero INTERGENIC
SBS Chr4 16278667 G-A Hetero INTERGENIC
SBS Chr4 16278669 G-A Hetero INTERGENIC
SBS Chr6 869868 G-A Hetero INTERGENIC
SBS Chr6 12247554 A-T Homo INTRON
SBS Chr6 27278643 C-T Hetero INTERGENIC
SBS Chr7 12876448 C-T Hetero INTERGENIC
SBS Chr7 13127541 C-T Homo INTERGENIC
SBS Chr7 19155447 T-C Hetero SPLICE_SITE_REGION
SBS Chr7 20185342 C-G Homo INTERGENIC
SBS Chr8 3199216 A-C Hetero INTERGENIC
SBS Chr8 6541835 G-A Hetero INTERGENIC
SBS Chr8 11061252 G-A Hetero UTR_5_PRIME
SBS Chr9 5112284 C-T Hetero INTERGENIC
SBS Chr9 16629875 T-C Hetero INTERGENIC
SBS Chr9 17007087 G-C Hetero INTERGENIC
SBS Chr9 20450003 G-A Hetero INTERGENIC
SBS Chr10 2485229 G-A Hetero INTERGENIC
SBS Chr10 9112929 C-T Hetero INTERGENIC
SBS Chr11 5335166 C-T Hetero INTERGENIC
SBS Chr11 10277412 T-A Hetero INTERGENIC
SBS Chr11 10277413 T-A Hetero INTERGENIC
SBS Chr11 15685342 C-G Hetero INTERGENIC
SBS Chr12 5778207 A-T Homo INTERGENIC
SBS Chr12 8302091 T-C Homo INTERGENIC
SBS Chr12 16168896 A-T Hetero INTERGENIC
SBS Chr12 24333161 G-A Hetero INTERGENIC

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1218212 1218219 7 OsKitaake12g017500
Deletion Chr8 1663710 1663711 1
Deletion Chr10 3790634 3790640 6
Deletion Chr12 3844665 3844666 1
Deletion Chr8 4346001 4436000 89999 16
Deletion Chr8 4969592 4969607 15
Deletion Chr8 4977754 4977759 5
Deletion Chr3 6959425 6959438 13
Deletion Chr8 7772291 7772300 9 OsKitaake08g071200
Deletion Chr12 8398182 8398183 1
Deletion Chr5 9387420 9387425 5
Deletion Chr4 9994277 9994293 16
Deletion Chr12 10797128 10797129 1
Deletion Chr3 11840553 11840562 9 OsKitaake03g161200
Deletion Chr2 13290096 13290097 1
Deletion Chr4 19280740 19280741 1
Deletion Chr3 21201269 21201281 12
Deletion Chr2 21936518 21936520 2
Deletion Chr12 23426788 23426797 9
Deletion Chr3 23990259 23990263 4
Deletion Chr8 25146670 25146671 1
Deletion Chr12 25627649 25627654 5
Deletion Chr5 25714763 25714774 11
Deletion Chr12 26201907 26201908 1
Deletion Chr6 28178269 28178273 4
Deletion Chr5 29148122 29148124 2
Deletion Chr2 30470904 30470910 6 OsKitaake02g310700
Deletion Chr1 31104088 31104098 10
Deletion Chr1 35524071 35524075 4 OsKitaake01g375800

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23867723 23867726 2
Insertion Chr3 28053461 28053464 2
Insertion Chr3 31799345 31799348 2
Insertion Chr7 18988520 18988524 3
Insertion Chr12 26130634 26130637 2
Insertion Chr11 19899294 19899297 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 27262041 27300164
Inversion Chr6 27262048 27300168

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4488463 Chr3 993043 2
Translocation Chr10 4488654 Chr3 993052 2
Translocation Chr9 22326836 Chr2 16682574 OsKitaake09g202200
Translocation Chr9 22326839 Chr2 16681062 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3819267	C-T	Hetero	INTERGENIC
SBS	Chr1	4189029	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	34969165	C-T	Homo	INTERGENIC
SBS	Chr1	39199333	G-A	Homo	INTERGENIC
SBS	Chr2	5125617	C-G	Hetero	INTERGENIC
SBS	Chr2	9294810	G-A	Hetero	INTERGENIC
SBS	Chr2	12360118	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g139700
SBS	Chr2	24732806	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	31046109	A-G	Hetero	INTERGENIC
SBS	Chr2	31093311	A-C	Hetero	INTRON
SBS	Chr2	32270039	C-T	Hetero	INTRON
SBS	Chr2	33395629	A-G	Hetero	INTRON
SBS	Chr3	3031235	C-A	Hetero	INTERGENIC
SBS	Chr3	4147766	G-T	Hetero	INTERGENIC
SBS	Chr3	4147770	T-A	Hetero	INTERGENIC
SBS	Chr3	10529190	C-A	Hetero	SPLICE_SITE_REGION
SBS	Chr3	12595474	G-C	Hetero	INTERGENIC
SBS	Chr3	20786645	C-A	Homo	INTRON
SBS	Chr3	20786646	T-C	Homo	INTRON
SBS	Chr3	25153451	C-T	Homo	INTERGENIC
SBS	Chr3	26409942	A-G	Homo	INTRON
SBS	Chr3	27929992	C-T	Hetero	INTERGENIC
SBS	Chr4	200895	A-T	Hetero	INTERGENIC
SBS	Chr4	200898	A-G	Hetero	INTERGENIC
SBS	Chr4	8781551	A-G	Hetero	INTERGENIC
SBS	Chr4	16278667	G-A	Hetero	INTERGENIC
SBS	Chr4	16278669	G-A	Hetero	INTERGENIC
SBS	Chr6	869868	G-A	Hetero	INTERGENIC
SBS	Chr6	12247554	A-T	Homo	INTRON
SBS	Chr6	27278643	C-T	Hetero	INTERGENIC
SBS	Chr7	12876448	C-T	Hetero	INTERGENIC
SBS	Chr7	13127541	C-T	Homo	INTERGENIC
SBS	Chr7	19155447	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr7	20185342	C-G	Homo	INTERGENIC
SBS	Chr8	3199216	A-C	Hetero	INTERGENIC
SBS	Chr8	6541835	G-A	Hetero	INTERGENIC
SBS	Chr8	11061252	G-A	Hetero	UTR_5_PRIME
SBS	Chr9	5112284	C-T	Hetero	INTERGENIC
SBS	Chr9	16629875	T-C	Hetero	INTERGENIC
SBS	Chr9	17007087	G-C	Hetero	INTERGENIC
SBS	Chr9	20450003	G-A	Hetero	INTERGENIC
SBS	Chr10	2485229	G-A	Hetero	INTERGENIC
SBS	Chr10	9112929	C-T	Hetero	INTERGENIC
SBS	Chr11	5335166	C-T	Hetero	INTERGENIC
SBS	Chr11	10277412	T-A	Hetero	INTERGENIC
SBS	Chr11	10277413	T-A	Hetero	INTERGENIC
SBS	Chr11	15685342	C-G	Hetero	INTERGENIC
SBS	Chr12	5778207	A-T	Homo	INTERGENIC
SBS	Chr12	8302091	T-C	Homo	INTERGENIC
SBS	Chr12	16168896	A-T	Hetero	INTERGENIC
SBS	Chr12	24333161	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1218212	1218219	7	OsKitaake12g017500
Deletion	Chr8	1663710	1663711	1
Deletion	Chr10	3790634	3790640	6
Deletion	Chr12	3844665	3844666	1
Deletion	Chr8	4346001	4436000	89999	16
Deletion	Chr8	4969592	4969607	15
Deletion	Chr8	4977754	4977759	5
Deletion	Chr3	6959425	6959438	13
Deletion	Chr8	7772291	7772300	9	OsKitaake08g071200
Deletion	Chr12	8398182	8398183	1
Deletion	Chr5	9387420	9387425	5
Deletion	Chr4	9994277	9994293	16
Deletion	Chr12	10797128	10797129	1
Deletion	Chr3	11840553	11840562	9	OsKitaake03g161200
Deletion	Chr2	13290096	13290097	1
Deletion	Chr4	19280740	19280741	1
Deletion	Chr3	21201269	21201281	12
Deletion	Chr2	21936518	21936520	2
Deletion	Chr12	23426788	23426797	9
Deletion	Chr3	23990259	23990263	4
Deletion	Chr8	25146670	25146671	1
Deletion	Chr12	25627649	25627654	5
Deletion	Chr5	25714763	25714774	11
Deletion	Chr12	26201907	26201908	1
Deletion	Chr6	28178269	28178273	4
Deletion	Chr5	29148122	29148124	2
Deletion	Chr2	30470904	30470910	6	OsKitaake02g310700
Deletion	Chr1	31104088	31104098	10
Deletion	Chr1	35524071	35524075	4	OsKitaake01g375800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	27262041	27300164
Inversion	Chr6	27262048	27300168

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes