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Mutant Information

Mutant Name	FN4344-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4344-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Homo INTERGENIC
SBS Chr1 8270872 C-A Hetero INTERGENIC
SBS Chr1 11065169 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g136000
SBS Chr1 22507242 G-A Hetero INTERGENIC
SBS Chr2 949382 C-T Homo INTRON
SBS Chr2 1177956 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g017600
SBS Chr2 1342938 A-T Homo INTERGENIC
SBS Chr2 14170129 C-T Hetero INTERGENIC
SBS Chr2 23476888 G-A Homo INTERGENIC
SBS Chr2 25673602 G-A Homo INTERGENIC
SBS Chr3 497376 C-T Homo INTERGENIC
SBS Chr3 713346 A-G Hetero INTRON
SBS Chr3 17163906 G-A Homo INTERGENIC
SBS Chr4 29377912 T-G Hetero INTRON
SBS Chr4 29377913 A-T Hetero INTRON
SBS Chr4 29377914 G-A Hetero INTRON
SBS Chr4 33906658 G-A Hetero INTERGENIC
SBS Chr4 34450551 G-T Hetero INTERGENIC
SBS Chr5 2401775 T-C Hetero INTRON
SBS Chr5 16381093 G-A Hetero INTERGENIC
SBS Chr5 19063584 G-C Homo INTERGENIC
SBS Chr5 19768580 T-A Hetero INTERGENIC
SBS Chr5 23013012 A-T Hetero INTERGENIC
SBS Chr6 21897743 G-A Hetero INTERGENIC
SBS Chr6 21897744 G-A Hetero INTERGENIC
SBS Chr6 22103952 G-A Hetero INTERGENIC
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr7 25176669 C-A Hetero INTERGENIC
SBS Chr8 9102767 T-A Hetero INTRON
SBS Chr8 13995283 G-A Hetero INTERGENIC
SBS Chr8 25371287 C-T Homo INTERGENIC
SBS Chr8 28869143 A-T Hetero INTERGENIC
SBS Chr9 1468302 T-A Hetero INTERGENIC
SBS Chr9 12476447 T-A Hetero START_GAINED
SBS Chr9 16239602 C-T Hetero INTERGENIC
SBS Chr10 4359044 A-T Homo INTERGENIC
SBS Chr10 23680045 T-A Hetero INTERGENIC
SBS Chr11 9295091 G-A Hetero INTERGENIC
SBS Chr11 9838744 G-A Hetero INTERGENIC
SBS Chr11 12890798 T-C Hetero INTERGENIC
SBS Chr11 17181148 T-A Hetero INTRON
SBS Chr11 25623557 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g206600
SBS Chr12 15545828 C-T Hetero INTERGENIC
SBS Chr12 17269775 C-T Hetero INTRON
SBS Chr12 25331630 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1677314 1677315 1
Deletion Chr11 3911969 3911972 3
Deletion Chr6 4699409 4699414 5
Deletion Chr2 10409936 10409953 17
Deletion Chr1 10494395 10494402 7
Deletion Chr1 11247001 11458000 210999 20
Deletion Chr2 11682007 11682009 2
Deletion Chr2 16338001 16441000 102999 7
Deletion Chr2 16508397 16508403 6
Deletion Chr10 17160431 17160437 6
Deletion Chr10 19829407 19829408 1 OsKitaake10g147800
Deletion Chr11 20536962 20536963 1
Deletion Chr4 30884177 30884179 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 26091602 26091605 2
Insertion Chr10 10005818 10005821 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 10568186 11249466
Inversion Chr5 28150236 28430831 OsKitaake05g260400
Inversion Chr5 28150241 28430834 OsKitaake05g260400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Homo	INTERGENIC
SBS	Chr1	8270872	C-A	Hetero	INTERGENIC
SBS	Chr1	11065169	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g136000
SBS	Chr1	22507242	G-A	Hetero	INTERGENIC
SBS	Chr2	949382	C-T	Homo	INTRON
SBS	Chr2	1177956	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g017600
SBS	Chr2	1342938	A-T	Homo	INTERGENIC
SBS	Chr2	14170129	C-T	Hetero	INTERGENIC
SBS	Chr2	23476888	G-A	Homo	INTERGENIC
SBS	Chr2	25673602	G-A	Homo	INTERGENIC
SBS	Chr3	497376	C-T	Homo	INTERGENIC
SBS	Chr3	713346	A-G	Hetero	INTRON
SBS	Chr3	17163906	G-A	Homo	INTERGENIC
SBS	Chr4	29377912	T-G	Hetero	INTRON
SBS	Chr4	29377913	A-T	Hetero	INTRON
SBS	Chr4	29377914	G-A	Hetero	INTRON
SBS	Chr4	33906658	G-A	Hetero	INTERGENIC
SBS	Chr4	34450551	G-T	Hetero	INTERGENIC
SBS	Chr5	2401775	T-C	Hetero	INTRON
SBS	Chr5	16381093	G-A	Hetero	INTERGENIC
SBS	Chr5	19063584	G-C	Homo	INTERGENIC
SBS	Chr5	19768580	T-A	Hetero	INTERGENIC
SBS	Chr5	23013012	A-T	Hetero	INTERGENIC
SBS	Chr6	21897743	G-A	Hetero	INTERGENIC
SBS	Chr6	21897744	G-A	Hetero	INTERGENIC
SBS	Chr6	22103952	G-A	Hetero	INTERGENIC
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr7	25176669	C-A	Hetero	INTERGENIC
SBS	Chr8	9102767	T-A	Hetero	INTRON
SBS	Chr8	13995283	G-A	Hetero	INTERGENIC
SBS	Chr8	25371287	C-T	Homo	INTERGENIC
SBS	Chr8	28869143	A-T	Hetero	INTERGENIC
SBS	Chr9	1468302	T-A	Hetero	INTERGENIC
SBS	Chr9	12476447	T-A	Hetero	START_GAINED
SBS	Chr9	16239602	C-T	Hetero	INTERGENIC
SBS	Chr10	4359044	A-T	Homo	INTERGENIC
SBS	Chr10	23680045	T-A	Hetero	INTERGENIC
SBS	Chr11	9295091	G-A	Hetero	INTERGENIC
SBS	Chr11	9838744	G-A	Hetero	INTERGENIC
SBS	Chr11	12890798	T-C	Hetero	INTERGENIC
SBS	Chr11	17181148	T-A	Hetero	INTRON
SBS	Chr11	25623557	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g206600
SBS	Chr12	15545828	C-T	Hetero	INTERGENIC
SBS	Chr12	17269775	C-T	Hetero	INTRON
SBS	Chr12	25331630	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1677314	1677315	1
Deletion	Chr11	3911969	3911972	3
Deletion	Chr6	4699409	4699414	5
Deletion	Chr2	10409936	10409953	17
Deletion	Chr1	10494395	10494402	7
Deletion	Chr1	11247001	11458000	210999	20
Deletion	Chr2	11682007	11682009	2
Deletion	Chr2	16338001	16441000	102999	7
Deletion	Chr2	16508397	16508403	6
Deletion	Chr10	17160431	17160437	6
Deletion	Chr10	19829407	19829408	1	OsKitaake10g147800
Deletion	Chr11	20536962	20536963	1
Deletion	Chr4	30884177	30884179	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	10568186	11249466
Inversion	Chr5	28150236	28430831	OsKitaake05g260400
Inversion	Chr5	28150241	28430834	OsKitaake05g260400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes