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Mutant Information

Mutant Name	FN448-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN448-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Low (Between 25% and 74%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4515677 A-T Hetero INTRON
SBS Chr1 9745590 C-T Homo INTERGENIC
SBS Chr1 18444849 C-T Homo INTERGENIC
SBS Chr1 42893127 A-G Homo INTERGENIC
SBS Chr1 42893131 G-A Homo INTERGENIC
SBS Chr2 18290509 C-T Hetero INTERGENIC
SBS Chr2 26380025 G-A Hetero INTERGENIC
SBS Chr2 31403950 C-T Homo INTERGENIC
SBS Chr3 2690183 T-C Hetero INTRON
SBS Chr3 23601952 G-A Homo INTRON
SBS Chr3 29757198 A-G Hetero INTERGENIC
SBS Chr4 8558026 G-A Hetero INTERGENIC
SBS Chr4 20395946 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g109400
SBS Chr4 21231282 C-A Hetero INTERGENIC
SBS Chr4 24650991 T-A Hetero INTERGENIC
SBS Chr4 29625236 G-T Homo INTERGENIC
SBS Chr5 19520140 A-G Hetero INTERGENIC
SBS Chr6 9597930 A-G Hetero INTERGENIC
SBS Chr6 11712174 T-A Hetero INTERGENIC
SBS Chr6 13440090 A-G Hetero INTRON
SBS Chr6 14108666 T-G Homo INTERGENIC
SBS Chr6 28824564 T-A Homo INTERGENIC
SBS Chr7 12791967 C-T Homo INTRON
SBS Chr7 19320701 T-A Homo INTERGENIC
SBS Chr7 26165481 G-A Homo INTERGENIC
SBS Chr8 13976025 G-T Hetero INTRON
SBS Chr8 24677084 G-T Homo NON_SYNONYMOUS_CODING OsKitaake08g192600
SBS Chr9 4743532 A-G Hetero INTERGENIC
SBS Chr11 1042972 C-T Hetero INTERGENIC
SBS Chr11 12290773 C-A Hetero INTERGENIC
SBS Chr11 12327350 A-T Hetero INTERGENIC
SBS Chr11 21011924 A-T Homo INTERGENIC
SBS Chr11 22120418 T-C Hetero INTERGENIC
SBS Chr11 24374222 C-T Hetero INTERGENIC
SBS Chr12 25684935 A-C Hetero INTRON

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 450562 450563 1
Deletion Chr4 1566835 1566840 5
Deletion Chr12 1581050 1581051 1
Deletion Chr2 15552720 15552721 1
Deletion Chr9 17957840 17957841 1
Deletion Chr6 18099415 18099541 126
Deletion Chr5 19707049 19707050 1
Deletion Chr8 23527729 23527753 24
Deletion Chr3 32041858 32041861 3
Deletion Chr1 34264921 34264922 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 333710 333713 2
Insertion Chr11 15853320 15853323 2

Inversions: 13

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 5222131 5223295
Inversion Chr8 5586453 5587991
Inversion Chr8 5588436 5589963
Inversion Chr8 5588692 5590142
Inversion Chr4 6268817 6270216 OsKitaake04g031350
Inversion Chr12 10040848 10042493 OsKitaake12g095000
Inversion Chr11 13574129 13575138
Inversion Chr3 17595644 17596475
Inversion Chr2 20243718 20244518
Inversion Chr11 22877724 22891748 2
Inversion Chr11 22877740 22891892 2
Inversion Chr2 36155316 36440314 OsKitaake02g382000
Inversion Chr2 36155319 36440313 OsKitaake02g382000

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8628855 Chr6 14760507

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4515677	A-T	Hetero	INTRON
SBS	Chr1	9745590	C-T	Homo	INTERGENIC
SBS	Chr1	18444849	C-T	Homo	INTERGENIC
SBS	Chr1	42893127	A-G	Homo	INTERGENIC
SBS	Chr1	42893131	G-A	Homo	INTERGENIC
SBS	Chr2	18290509	C-T	Hetero	INTERGENIC
SBS	Chr2	26380025	G-A	Hetero	INTERGENIC
SBS	Chr2	31403950	C-T	Homo	INTERGENIC
SBS	Chr3	2690183	T-C	Hetero	INTRON
SBS	Chr3	23601952	G-A	Homo	INTRON
SBS	Chr3	29757198	A-G	Hetero	INTERGENIC
SBS	Chr4	8558026	G-A	Hetero	INTERGENIC
SBS	Chr4	20395946	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g109400
SBS	Chr4	21231282	C-A	Hetero	INTERGENIC
SBS	Chr4	24650991	T-A	Hetero	INTERGENIC
SBS	Chr4	29625236	G-T	Homo	INTERGENIC
SBS	Chr5	19520140	A-G	Hetero	INTERGENIC
SBS	Chr6	9597930	A-G	Hetero	INTERGENIC
SBS	Chr6	11712174	T-A	Hetero	INTERGENIC
SBS	Chr6	13440090	A-G	Hetero	INTRON
SBS	Chr6	14108666	T-G	Homo	INTERGENIC
SBS	Chr6	28824564	T-A	Homo	INTERGENIC
SBS	Chr7	12791967	C-T	Homo	INTRON
SBS	Chr7	19320701	T-A	Homo	INTERGENIC
SBS	Chr7	26165481	G-A	Homo	INTERGENIC
SBS	Chr8	13976025	G-T	Hetero	INTRON
SBS	Chr8	24677084	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g192600
SBS	Chr9	4743532	A-G	Hetero	INTERGENIC
SBS	Chr11	1042972	C-T	Hetero	INTERGENIC
SBS	Chr11	12290773	C-A	Hetero	INTERGENIC
SBS	Chr11	12327350	A-T	Hetero	INTERGENIC
SBS	Chr11	21011924	A-T	Homo	INTERGENIC
SBS	Chr11	22120418	T-C	Hetero	INTERGENIC
SBS	Chr11	24374222	C-T	Hetero	INTERGENIC
SBS	Chr12	25684935	A-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	450562	450563	1
Deletion	Chr4	1566835	1566840	5
Deletion	Chr12	1581050	1581051	1
Deletion	Chr2	15552720	15552721	1
Deletion	Chr9	17957840	17957841	1
Deletion	Chr6	18099415	18099541	126
Deletion	Chr5	19707049	19707050	1
Deletion	Chr8	23527729	23527753	24
Deletion	Chr3	32041858	32041861	3
Deletion	Chr1	34264921	34264922	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	5222131	5223295
Inversion	Chr8	5586453	5587991
Inversion	Chr8	5588436	5589963
Inversion	Chr8	5588692	5590142
Inversion	Chr4	6268817	6270216	OsKitaake04g031350
Inversion	Chr12	10040848	10042493	OsKitaake12g095000
Inversion	Chr11	13574129	13575138
Inversion	Chr3	17595644	17596475
Inversion	Chr2	20243718	20244518
Inversion	Chr11	22877724	22891748	2
Inversion	Chr11	22877740	22891892	2
Inversion	Chr2	36155316	36440314	OsKitaake02g382000
Inversion	Chr2	36155319	36440313	OsKitaake02g382000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes