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Mutant Information

Mutant Name	FN463-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN463-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Very Low (below 24% compare to WT) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Very Low (Below 24%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3172191 G-C Hetero INTERGENIC
SBS Chr1 24022662 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g230900
SBS Chr2 14989656 C-T Homo INTRON
SBS Chr2 29408411 G-A Homo INTERGENIC
SBS Chr3 19023724 G-A Hetero INTERGENIC
SBS Chr4 4248708 C-T Homo INTERGENIC
SBS Chr4 7269427 C-T Homo INTERGENIC
SBS Chr4 9129985 G-C Homo INTERGENIC
SBS Chr4 9905371 G-T Homo INTERGENIC
SBS Chr4 29038454 A-T Homo INTERGENIC
SBS Chr4 32269163 A-G Hetero INTERGENIC
SBS Chr5 1294575 G-A Hetero INTERGENIC
SBS Chr5 4238186 G-A Hetero INTERGENIC
SBS Chr5 5562637 A-T Hetero INTRON
SBS Chr6 696703 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g006900
SBS Chr6 19611929 C-T Hetero INTERGENIC
SBS Chr7 10662174 A-T Homo INTERGENIC
SBS Chr8 4968588 A-G Homo INTERGENIC
SBS Chr8 6534037 C-T Homo INTERGENIC
SBS Chr9 13181805 A-T Hetero INTERGENIC
SBS Chr9 20569305 T-A Hetero INTERGENIC
SBS Chr10 14925566 G-A Homo INTERGENIC
SBS Chr11 1291014 A-T Homo INTRON
SBS Chr11 11727520 C-T Hetero INTERGENIC
SBS Chr11 20089573 G-C Hetero INTERGENIC
SBS Chr11 24385621 G-A Homo INTERGENIC
SBS Chr11 27188659 C-T Homo UTR_3_PRIME

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 63619 63620 1
Deletion Chr4 2755001 2792000 36999
Deletion Chr4 2827001 2888000 60999
Deletion Chr2 3215574 3215584 10
Deletion Chr5 4639939 4639943 4
Deletion Chr8 7356274 7356288 14
Deletion Chr11 7401195 7401196 1
Deletion Chr1 8116863 8116916 53
Deletion Chr4 11706967 11706971 4
Deletion Chr8 12237001 12425000 187999 6
Deletion Chr7 13725001 13730000 4999
Deletion Chr6 14290001 14717000 426999 15
Deletion Chr1 24603759 24603765 6 OsKitaake01g237700
Deletion Chr6 29311001 29422000 110999 12
Deletion Chr2 32087670 32087673 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 7919308 7919311 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 7004526 7332961 2
Inversion Chr11 7004530 7332961 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 29311142 Chr4 2903055

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3172191	G-C	Hetero	INTERGENIC
SBS	Chr1	24022662	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g230900
SBS	Chr2	14989656	C-T	Homo	INTRON
SBS	Chr2	29408411	G-A	Homo	INTERGENIC
SBS	Chr3	19023724	G-A	Hetero	INTERGENIC
SBS	Chr4	4248708	C-T	Homo	INTERGENIC
SBS	Chr4	7269427	C-T	Homo	INTERGENIC
SBS	Chr4	9129985	G-C	Homo	INTERGENIC
SBS	Chr4	9905371	G-T	Homo	INTERGENIC
SBS	Chr4	29038454	A-T	Homo	INTERGENIC
SBS	Chr4	32269163	A-G	Hetero	INTERGENIC
SBS	Chr5	1294575	G-A	Hetero	INTERGENIC
SBS	Chr5	4238186	G-A	Hetero	INTERGENIC
SBS	Chr5	5562637	A-T	Hetero	INTRON
SBS	Chr6	696703	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g006900
SBS	Chr6	19611929	C-T	Hetero	INTERGENIC
SBS	Chr7	10662174	A-T	Homo	INTERGENIC
SBS	Chr8	4968588	A-G	Homo	INTERGENIC
SBS	Chr8	6534037	C-T	Homo	INTERGENIC
SBS	Chr9	13181805	A-T	Hetero	INTERGENIC
SBS	Chr9	20569305	T-A	Hetero	INTERGENIC
SBS	Chr10	14925566	G-A	Homo	INTERGENIC
SBS	Chr11	1291014	A-T	Homo	INTRON
SBS	Chr11	11727520	C-T	Hetero	INTERGENIC
SBS	Chr11	20089573	G-C	Hetero	INTERGENIC
SBS	Chr11	24385621	G-A	Homo	INTERGENIC
SBS	Chr11	27188659	C-T	Homo	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	63619	63620	1
Deletion	Chr4	2755001	2792000	36999
Deletion	Chr4	2827001	2888000	60999
Deletion	Chr2	3215574	3215584	10
Deletion	Chr5	4639939	4639943	4
Deletion	Chr8	7356274	7356288	14
Deletion	Chr11	7401195	7401196	1
Deletion	Chr1	8116863	8116916	53
Deletion	Chr4	11706967	11706971	4
Deletion	Chr8	12237001	12425000	187999	6
Deletion	Chr7	13725001	13730000	4999
Deletion	Chr6	14290001	14717000	426999	15
Deletion	Chr1	24603759	24603765	6	OsKitaake01g237700
Deletion	Chr6	29311001	29422000	110999	12
Deletion	Chr2	32087670	32087673	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	7004526	7332961	2
Inversion	Chr11	7004530	7332961	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes