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Mutant Information

Mutant Name	FN539-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN539-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 1949092 T-C Hetero UTR_3_PRIME
SBS Chr2 12013762 G-A Hetero INTERGENIC
SBS Chr2 16313236 T-G Hetero INTRON
SBS Chr5 1289779 T-G Hetero SYNONYMOUS_CODING
SBS Chr5 13796158 C-T Hetero INTERGENIC
SBS Chr5 24081856 C-A Homo INTERGENIC
SBS Chr6 9390962 T-C Hetero INTERGENIC
SBS Chr6 14032765 G-A Hetero INTERGENIC
SBS Chr6 22654451 C-A Homo INTERGENIC
SBS Chr8 1877802 T-A Hetero INTERGENIC
SBS Chr8 25601284 C-T Hetero INTERGENIC
SBS Chr8 25601285 C-T Hetero INTERGENIC
SBS Chr9 18340150 T-A Hetero INTERGENIC
SBS Chr9 19616779 T-C Homo UTR_3_PRIME
SBS Chr10 10641704 G-A Hetero INTERGENIC
SBS Chr10 17783242 T-A Homo INTERGENIC
SBS Chr11 6601099 T-C Hetero INTRON
SBS Chr11 21262408 C-T Hetero INTERGENIC
SBS Chr11 22937346 A-T Homo INTERGENIC
SBS Chr11 22937347 G-T Homo INTERGENIC
SBS Chr12 2969939 A-T Hetero INTERGENIC
SBS Chr12 16210343 G-T Hetero INTERGENIC
SBS Chr12 16210344 A-T Hetero INTERGENIC
SBS Chr12 21231990 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3520572 3520594 22
Deletion Chr9 4113332 4113340 8
Deletion Chr7 6608187 6608189 2
Deletion Chr11 10055108 10055112 4
Deletion Chr2 13960932 13960939 7
Deletion Chr6 18704828 18704829 1
Deletion Chr9 19270909 19270915 6
Deletion Chr12 19582289 19582291 2
Deletion Chr5 22153143 22153151 8
Deletion Chr7 22240001 22291000 50999 9
Deletion Chr10 23656704 23656708 4
Deletion Chr11 25143338 25143340 2
Deletion Chr5 30237084 30237437 353
Deletion Chr2 31190351 31190353 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 5904684 5904687 2
Insertion Chr10 16403060 16403065 4
Insertion Chr2 13756014 13756016 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 15220327 15755917 OsKitaake02g163400
Inversion Chr2 15220329 15755923 OsKitaake02g163400

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 72146 Chr8 27716659 OsKitaake08g231000
Translocation Chr12 72152 Chr8 27716666 OsKitaake08g231000
Translocation Chr7 916774 Chr2 1342895
Translocation Chr7 916931 Chr2 1342893
Translocation Chr12 5894292 Chr7 22241136 OsKitaake07g187600
Translocation Chr12 5895146 Chr7 22290669
Translocation Chr12 26395253 Chr9 12960272
Translocation Chr12 26409832 Chr9 12960251

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	1949092	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	12013762	G-A	Hetero	INTERGENIC
SBS	Chr2	16313236	T-G	Hetero	INTRON
SBS	Chr5	1289779	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	13796158	C-T	Hetero	INTERGENIC
SBS	Chr5	24081856	C-A	Homo	INTERGENIC
SBS	Chr6	9390962	T-C	Hetero	INTERGENIC
SBS	Chr6	14032765	G-A	Hetero	INTERGENIC
SBS	Chr6	22654451	C-A	Homo	INTERGENIC
SBS	Chr8	1877802	T-A	Hetero	INTERGENIC
SBS	Chr8	25601284	C-T	Hetero	INTERGENIC
SBS	Chr8	25601285	C-T	Hetero	INTERGENIC
SBS	Chr9	18340150	T-A	Hetero	INTERGENIC
SBS	Chr9	19616779	T-C	Homo	UTR_3_PRIME
SBS	Chr10	10641704	G-A	Hetero	INTERGENIC
SBS	Chr10	17783242	T-A	Homo	INTERGENIC
SBS	Chr11	6601099	T-C	Hetero	INTRON
SBS	Chr11	21262408	C-T	Hetero	INTERGENIC
SBS	Chr11	22937346	A-T	Homo	INTERGENIC
SBS	Chr11	22937347	G-T	Homo	INTERGENIC
SBS	Chr12	2969939	A-T	Hetero	INTERGENIC
SBS	Chr12	16210343	G-T	Hetero	INTERGENIC
SBS	Chr12	16210344	A-T	Hetero	INTERGENIC
SBS	Chr12	21231990	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3520572	3520594	22
Deletion	Chr9	4113332	4113340	8
Deletion	Chr7	6608187	6608189	2
Deletion	Chr11	10055108	10055112	4
Deletion	Chr2	13960932	13960939	7
Deletion	Chr6	18704828	18704829	1
Deletion	Chr9	19270909	19270915	6
Deletion	Chr12	19582289	19582291	2
Deletion	Chr5	22153143	22153151	8
Deletion	Chr7	22240001	22291000	50999	9
Deletion	Chr10	23656704	23656708	4
Deletion	Chr11	25143338	25143340	2
Deletion	Chr5	30237084	30237437	353
Deletion	Chr2	31190351	31190353	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	15220327	15755917	OsKitaake02g163400
Inversion	Chr2	15220329	15755923	OsKitaake02g163400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes