Search Kitaake

Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN552-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN552-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15644099 G-T Homo INTERGENIC
SBS Chr1 21393737 G-C Hetero INTERGENIC
SBS Chr1 33740059 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g346400
SBS Chr2 2121679 C-T Hetero INTERGENIC
SBS Chr2 5969574 T-C Homo INTERGENIC
SBS Chr2 5969577 T-A Homo INTERGENIC
SBS Chr2 24385957 C-A Hetero INTRON
SBS Chr3 997792 G-A Hetero INTERGENIC
SBS Chr3 26350477 G-A Hetero INTERGENIC
SBS Chr3 26776943 A-T Hetero INTERGENIC
SBS Chr3 31061202 T-A Homo INTRON
SBS Chr4 7451832 A-T Hetero INTERGENIC
SBS Chr4 32456169 C-A Hetero INTERGENIC
SBS Chr5 8361670 G-T Homo INTERGENIC
SBS Chr5 14498101 G-A Homo UTR_3_PRIME
SBS Chr5 24518746 C-A Hetero INTERGENIC
SBS Chr5 24518747 C-G Hetero INTERGENIC
SBS Chr6 10986546 C-T Hetero INTERGENIC
SBS Chr6 30113648 C-T Homo INTERGENIC
SBS Chr7 166644 G-A Homo INTERGENIC
SBS Chr7 3594982 C-T Hetero INTERGENIC
SBS Chr7 6839159 G-T Hetero INTERGENIC
SBS Chr7 6839852 T-A Hetero INTERGENIC
SBS Chr7 9306378 G-A Hetero INTERGENIC
SBS Chr7 10828332 C-A Hetero INTERGENIC
SBS Chr7 10875041 A-T Hetero INTERGENIC
SBS Chr7 26189023 C-T Homo INTERGENIC
SBS Chr8 4471353 T-A Homo NON_SYNONYMOUS_CODING OsKitaake08g050701
SBS Chr8 15450359 G-A Homo INTERGENIC
SBS Chr8 27983447 A-G Homo INTRON
SBS Chr9 8851245 G-C Homo INTERGENIC
SBS Chr9 15937677 C-T Hetero INTERGENIC
SBS Chr9 20801380 T-A Hetero INTERGENIC
SBS Chr9 22130058 T-C Hetero SYNONYMOUS_CODING
SBS Chr9 22659039 C-T Hetero INTERGENIC
SBS Chr10 11774259 A-C Hetero INTERGENIC
SBS Chr10 13145553 G-A Hetero INTERGENIC
SBS Chr11 10988746 G-A Homo INTERGENIC
SBS Chr11 28227167 C-A Homo INTERGENIC
SBS Chr12 20184215 C-T Hetero INTERGENIC
SBS Chr12 21613577 G-A Homo INTERGENIC
SBS Chr12 25505529 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g209700
SBS Chr12 25505530 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g209700

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 351529 351530 1 OsKitaake03g004900
Deletion Chr4 867784 868009 225
Deletion Chr8 1102390 1102393 3
Deletion Chr7 2244404 2244405 1
Deletion Chr7 2621001 2741000 119999 12
Deletion Chr1 4720011 4720023 12
Deletion Chr4 10369707 10369710 3
Deletion Chr4 10487516 10487521 5
Deletion Chr1 11156665 11156683 18
Deletion Chr2 12058548 12058561 13
Deletion Chr6 12560050 12560051 1
Deletion Chr9 14053567 14053605 38
Deletion Chr7 15964268 15964269 1
Deletion Chr12 20102497 20102499 2
Deletion Chr5 21327618 21327619 1
Deletion Chr10 21870600 21870601 1
Deletion Chr7 22246621 22246622 1
Deletion Chr6 22561165 22561174 9
Deletion Chr5 23268781 23268783 2
Deletion Chr5 24635175 24635178 3
Deletion Chr3 36683805 36683811 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6621082 6621085 2
Insertion Chr6 20929533 20929536 2
Insertion Chr2 13850924 13850926 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 5946186 6827856 OsKitaake07g071900
Inversion Chr7 5946200 6578628 OsKitaake07g071900

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8614026 Chr7 13904532

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15644099	G-T	Homo	INTERGENIC
SBS	Chr1	21393737	G-C	Hetero	INTERGENIC
SBS	Chr1	33740059	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g346400
SBS	Chr2	2121679	C-T	Hetero	INTERGENIC
SBS	Chr2	5969574	T-C	Homo	INTERGENIC
SBS	Chr2	5969577	T-A	Homo	INTERGENIC
SBS	Chr2	24385957	C-A	Hetero	INTRON
SBS	Chr3	997792	G-A	Hetero	INTERGENIC
SBS	Chr3	26350477	G-A	Hetero	INTERGENIC
SBS	Chr3	26776943	A-T	Hetero	INTERGENIC
SBS	Chr3	31061202	T-A	Homo	INTRON
SBS	Chr4	7451832	A-T	Hetero	INTERGENIC
SBS	Chr4	32456169	C-A	Hetero	INTERGENIC
SBS	Chr5	8361670	G-T	Homo	INTERGENIC
SBS	Chr5	14498101	G-A	Homo	UTR_3_PRIME
SBS	Chr5	24518746	C-A	Hetero	INTERGENIC
SBS	Chr5	24518747	C-G	Hetero	INTERGENIC
SBS	Chr6	10986546	C-T	Hetero	INTERGENIC
SBS	Chr6	30113648	C-T	Homo	INTERGENIC
SBS	Chr7	166644	G-A	Homo	INTERGENIC
SBS	Chr7	3594982	C-T	Hetero	INTERGENIC
SBS	Chr7	6839159	G-T	Hetero	INTERGENIC
SBS	Chr7	6839852	T-A	Hetero	INTERGENIC
SBS	Chr7	9306378	G-A	Hetero	INTERGENIC
SBS	Chr7	10828332	C-A	Hetero	INTERGENIC
SBS	Chr7	10875041	A-T	Hetero	INTERGENIC
SBS	Chr7	26189023	C-T	Homo	INTERGENIC
SBS	Chr8	4471353	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g050701
SBS	Chr8	15450359	G-A	Homo	INTERGENIC
SBS	Chr8	27983447	A-G	Homo	INTRON
SBS	Chr9	8851245	G-C	Homo	INTERGENIC
SBS	Chr9	15937677	C-T	Hetero	INTERGENIC
SBS	Chr9	20801380	T-A	Hetero	INTERGENIC
SBS	Chr9	22130058	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr9	22659039	C-T	Hetero	INTERGENIC
SBS	Chr10	11774259	A-C	Hetero	INTERGENIC
SBS	Chr10	13145553	G-A	Hetero	INTERGENIC
SBS	Chr11	10988746	G-A	Homo	INTERGENIC
SBS	Chr11	28227167	C-A	Homo	INTERGENIC
SBS	Chr12	20184215	C-T	Hetero	INTERGENIC
SBS	Chr12	21613577	G-A	Homo	INTERGENIC
SBS	Chr12	25505529	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g209700
SBS	Chr12	25505530	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g209700

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	351529	351530	1	OsKitaake03g004900
Deletion	Chr4	867784	868009	225
Deletion	Chr8	1102390	1102393	3
Deletion	Chr7	2244404	2244405	1
Deletion	Chr7	2621001	2741000	119999	12
Deletion	Chr1	4720011	4720023	12
Deletion	Chr4	10369707	10369710	3
Deletion	Chr4	10487516	10487521	5
Deletion	Chr1	11156665	11156683	18
Deletion	Chr2	12058548	12058561	13
Deletion	Chr6	12560050	12560051	1
Deletion	Chr9	14053567	14053605	38
Deletion	Chr7	15964268	15964269	1
Deletion	Chr12	20102497	20102499	2
Deletion	Chr5	21327618	21327619	1
Deletion	Chr10	21870600	21870601	1
Deletion	Chr7	22246621	22246622	1
Deletion	Chr6	22561165	22561174	9
Deletion	Chr5	23268781	23268783	2
Deletion	Chr5	24635175	24635178	3
Deletion	Chr3	36683805	36683811	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5946186	6827856	OsKitaake07g071900
Inversion	Chr7	5946200	6578628	OsKitaake07g071900

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes