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| Mutant Information |
|---|
| Mutant Name | FN555-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN555-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4139785 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 27140369 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29885314 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 409628 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13858374 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 24762784 | T-G | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 24994266 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 14034252 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32242080 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13263907 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 13488998 | G-T | Hetero | INTRON | |
| SBS | Chr4 | 16302819 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16471006 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 26336482 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 32072065 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 11857284 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 22334329 | T-A | Hetero | INTRON | |
| SBS | Chr7 | 3598802 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 9707171 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 11232091 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19789414 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 1465133 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 6765850 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15780199 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 20408991 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 22968159 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 23927254 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 27774765 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28627825 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1264129 | C-T | Homo | INTRON | |
| SBS | Chr9 | 1422428 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 21979795 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g195900 |
| SBS | Chr10 | 14884834 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 856994 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 3958285 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 1084846 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 26331136 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 27096733 | C-T | Hetero | INTRON |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 176980 | 176983 | 3 | |
| Deletion | Chr7 | 602517 | 602519 | 2 | |
| Deletion | Chr11 | 6313001 | 6325000 | 11999 | |
| Deletion | Chr12 | 7304816 | 7304817 | 1 | |
| Deletion | Chr11 | 8076001 | 8209000 | 132999 | 11 |
| Deletion | Chr10 | 8231961 | 8231970 | 9 | |
| Deletion | Chr6 | 8488709 | 8488710 | 1 | |
| Deletion | Chr7 | 12389437 | 12389440 | 3 | |
| Deletion | Chr7 | 12390656 | 12390670 | 14 | |
| Deletion | Chr11 | 12463451 | 12463476 | 25 | |
| Deletion | Chr3 | 16065796 | 16065802 | 6 | |
| Deletion | Chr9 | 21382055 | 21382059 | 4 | OsKitaake09g185100 |
| Deletion | Chr5 | 23360373 | 23360380 | 7 | |
| Deletion | Chr6 | 24582253 | 24582258 | 5 | |
| Deletion | Chr3 | 25337161 | 25337182 | 21 | |
| Deletion | Chr6 | 27144817 | 27144818 | 1 | OsKitaake06g244200 |
| Deletion | Chr4 | 27158249 | 27158261 | 12 | |
| Deletion | Chr4 | 32568493 | 32568510 | 17 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 15067673 | 15067676 | 2 | |
| Insertion | Chr8 | 6270971 | 6270974 | 2 | |
| Insertion | Chr11 | 5594564 | 5594566 | 1 | |
| Insertion | Chr12 | 23723859 | 23723862 | 2 |
Inversions: 113
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 33743 | 33909 | OsKitaake12g000400 |
| Inversion | Chr3 | 147614 | 147925 | |
| Inversion | Chr4 | 247659 | 247950 | OsKitaake04g001300 |
| Inversion | Chr5 | 321195 | 321342 | |
| Inversion | Chr7 | 331494 | 331743 | OsKitaake07g002700 |
| Inversion | Chr6 | 440161 | 440282 | OsKitaake06g003400 |
| Inversion | Chr6 | 717230 | 717395 | OsKitaake06g007100 |
| Inversion | Chr1 | 1247108 | 1247368 | |
| Inversion | Chr8 | 1282696 | 1283039 | |
| Inversion | Chr2 | 1437049 | 1437399 | OsKitaake02g022300 |
| Inversion | Chr8 | 1633091 | 1633261 | OsKitaake08g021100 |
| Inversion | Chr9 | 1760586 | 1760963 | |
| Inversion | Chr5 | 1766192 | 1766418 | |
| Inversion | Chr2 | 1982066 | 1982236 | |
| Inversion | Chr8 | 2079028 | 2079267 | OsKitaake08g024400 |
| Inversion | Chr12 | 2298002 | 2298177 | |
| Inversion | Chr7 | 2588792 | 2589054 | OsKitaake07g034100 |
| Inversion | Chr2 | 3265117 | 3265580 | |
| Inversion | Chr3 | 3334306 | 3334520 | OsKitaake03g047300 |
| Inversion | Chr2 | 4095609 | 4095854 | OsKitaake02g057650 |
| Inversion | Chr3 | 4105493 | 4105719 | OsKitaake03g058200 |
| Inversion | Chr5 | 4834019 | 4834197 | OsKitaake05g054000 |
| Inversion | Chr3 | 5286753 | 5286887 | OsKitaake03g074900 |
| Inversion | Chr1 | 5433884 | 5434209 | |
| Inversion | Chr5 | 6130503 | 6130843 | |
| Inversion | Chr3 | 6534470 | 6534707 | OsKitaake03g093100 |
| Inversion | Chr9 | 7393451 | 7393643 | OsKitaake09g042300 |
| Inversion | Chr4 | 7436787 | 7437032 | OsKitaake04g037833 |
| Inversion | Chr4 | 7917236 | 7917442 | OsKitaake04g041200 |
| Inversion | Chr1 | 8096365 | 8096530 | OsKitaake01g101300 |
| Inversion | Chr2 | 8272591 | 8272756 | |
| Inversion | Chr2 | 8280836 | 8281038 | OsKitaake02g105300 |
| Inversion | Chr3 | 8344127 | 8344233 | OsKitaake03g114900 |
| Inversion | Chr2 | 8580103 | 8580345 | |
| Inversion | Chr5 | 8683279 | 8683617 | OsKitaake05g082600 |
| Inversion | Chr4 | 8737509 | 8737787 | |
| Inversion | Chr11 | 8800281 | 8800570 | |
| Inversion | Chr11 | 9284542 | 9284679 | OsKitaake11g097300 |
| Inversion | Chr8 | 9651049 | 9651415 | OsKitaake08g090800 |
| Inversion | Chr1 | 9848272 | 9848568 | |
| Inversion | Chr8 | 9976943 | 9977074 | OsKitaake08g092100 |
| Inversion | Chr5 | 10628102 | 10628429 | |
| Inversion | Chr9 | 10649541 | 10649814 | |
| Inversion | Chr9 | 10814215 | 10814612 | OsKitaake09g067000 |
| Inversion | Chr1 | 11439319 | 11439602 | OsKitaake01g139700 |
| Inversion | Chr3 | 11468279 | 11468577 | |
| Inversion | Chr9 | 11590130 | 11590408 | OsKitaake09g072700 |
| Inversion | Chr3 | 11795212 | 11795312 | OsKitaake03g160200 |
| Inversion | Chr10 | 11989863 | 11990103 | OsKitaake10g071500 |
| Inversion | Chr1 | 12035414 | 12035819 | |
| Inversion | Chr1 | 12057106 | 12057418 | OsKitaake01g147600 |
| Inversion | Chr11 | 12316649 | 12316903 | OsKitaake11g112950 |
| Inversion | Chr3 | 12472031 | 12472218 | OsKitaake03g168400 |
| Inversion | Chr2 | 12564083 | 12564500 | OsKitaake02g141100 |
| Inversion | Chr3 | 12717175 | 12717307 | OsKitaake03g171500 |
| Inversion | Chr9 | 12882042 | 12882157 | |
| Inversion | Chr7 | 13363493 | 13363838 | OsKitaake07g117900 |
| Inversion | Chr9 | 13416705 | 13416844 | |
| Inversion | Chr1 | 14257103 | 14257401 | OsKitaake01g163000 |
| Inversion | Chr1 | 14659664 | 14659921 | OsKitaake01g166000 |
| Inversion | Chr7 | 14997579 | 14997903 | |
| Inversion | Chr3 | 15535220 | 15535526 | OsKitaake03g200100 |
| Inversion | Chr3 | 15711118 | 15711387 | OsKitaake03g201500 |
| Inversion | Chr2 | 15883204 | 15883374 | |
| Inversion | Chr7 | 15996404 | 15996560 | OsKitaake07g132300 |
| Inversion | Chr7 | 16696921 | 16697145 | |
| Inversion | Chr5 | 16794658 | 16794943 | OsKitaake05g128600 |
| Inversion | Chr10 | 16970910 | 16971142 | OsKitaake10g116400 |
| Inversion | Chr7 | 17355353 | 17355530 | OsKitaake07g141300 |
| Inversion | Chr10 | 17564095 | 17564282 | OsKitaake10g120000 |
| Inversion | Chr5 | 17720029 | 17720183 | |
| Inversion | Chr3 | 18500679 | 18501106 | OsKitaake03g224200 |
| Inversion | Chr3 | 18551656 | 18552058 | OsKitaake03g224500 |
| Inversion | Chr9 | 19887546 | 19887809 | OsKitaake09g165500 |
| Inversion | Chr7 | 19918556 | 19918761 | OsKitaake07g163200 |
| Inversion | Chr11 | 20268260 | 20268430 | OsKitaake11g158200 |
| Inversion | Chr6 | 20551517 | 20551875 | |
| Inversion | Chr4 | 20686016 | 20686259 | |
| Inversion | Chr3 | 20864649 | 20864781 | |
| Inversion | Chr1 | 20917953 | 20918061 | OsKitaake01g204700 |
| Inversion | Chr9 | 20971028 | 20971181 | OsKitaake09g179600 |
| Inversion | Chr2 | 22702568 | 22702852 | |
| Inversion | Chr4 | 22716425 | 22716574 | OsKitaake04g135100 |
| Inversion | Chr2 | 22793936 | 22794142 | |
| Inversion | Chr5 | 22999357 | 22999541 | |
| Inversion | Chr12 | 23618003 | 23618165 | OsKitaake12g189700 |
| Inversion | Chr8 | 23683620 | 23683826 | |
| Inversion | Chr11 | 23764324 | 23764701 | OsKitaake11g189900 |
| Inversion | Chr11 | 24689502 | 24689624 | OsKitaake11g200300 |
| Inversion | Chr11 | 25673472 | 25673685 | OsKitaake11g207400 |
| Inversion | Chr7 | 25961225 | 25961617 | OsKitaake07g237300 |
| Inversion | Chr11 | 26140403 | 26140686 | |
| Inversion | Chr5 | 26546271 | 26546544 | |
| Inversion | Chr12 | 26877890 | 26878078 | OsKitaake12g224500 |
| Inversion | Chr8 | 27201492 | 27201624 | OsKitaake08g223250 |
| Inversion | Chr3 | 27324260 | 27324448 | OsKitaake03g281500 |
| Inversion | Chr2 | 27782033 | 27782191 | OsKitaake02g279300 |
| Inversion | Chr4 | 27876141 | 27876325 | |
| Inversion | Chr3 | 28117253 | 28117575 | |
| Inversion | Chr8 | 28448140 | 28448368 | OsKitaake08g240900 |
| Inversion | Chr5 | 28850395 | 28850698 | |
| Inversion | Chr2 | 29767953 | 29768349 | OsKitaake02g301000 |
| Inversion | Chr2 | 32608071 | 32608290 | |
| Inversion | Chr2 | 32743005 | 32743208 | OsKitaake02g335500 |
| Inversion | Chr4 | 33821258 | 33821375 | OsKitaake04g281500 |
| Inversion | Chr2 | 34391457 | 34391678 | OsKitaake02g357600 |
| Inversion | Chr2 | 34689194 | 34689452 | OsKitaake02g361500 |
| Inversion | Chr1 | 35384951 | 35385259 | OsKitaake01g373200 |
| Inversion | Chr3 | 35924006 | 35924224 | |
| Inversion | Chr4 | 36356601 | 36356754 | OsKitaake04g315500 |
| Inversion | Chr1 | 36657428 | 36657915 | OsKitaake01g389600 |
| Inversion | Chr1 | 37312391 | 37312525 | OsKitaake01g398000 |
| Inversion | Chr1 | 38622955 | 38623223 | OsKitaake01g412900 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 9068637 | Chr2 | 26851790 | OsKitaake11g096200 |
| Translocation | Chr11 | 9074910 | Chr5 | 40655 | OsKitaake05g000300 |
| Translocation | Chr11 | 9074924 | Chr2 | 26848555 |