Search Kitaake

Mutant Information

Mutant Name	FN560-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN560-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17222618 C-A Hetero INTERGENIC
SBS Chr2 8251393 G-A Homo INTERGENIC
SBS Chr3 10063388 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g137500
SBS Chr3 17753478 G-A Hetero INTERGENIC
SBS Chr3 20317694 C-T Homo INTERGENIC
SBS Chr3 29698812 G-A Homo SYNONYMOUS_CODING
SBS Chr4 2766811 C-T Hetero INTERGENIC
SBS Chr5 2843147 G-A Homo INTERGENIC
SBS Chr5 16816651 T-A Hetero INTRON
SBS Chr5 25756513 A-T Hetero INTERGENIC
SBS Chr7 1553350 T-G Homo INTERGENIC
SBS Chr7 10692023 T-C Homo INTERGENIC
SBS Chr8 29281371 A-G Homo INTERGENIC
SBS Chr8 29281375 G-T Homo INTERGENIC
SBS Chr10 1002286 G-C Homo INTERGENIC
SBS Chr10 8515481 A-G Hetero INTRON
SBS Chr10 14848979 G-A Hetero INTERGENIC
SBS Chr11 5040435 C-T Homo INTERGENIC
SBS Chr11 25338254 A-C Hetero INTERGENIC
SBS Chr11 29108342 T-A Hetero INTERGENIC

Deletions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 3675001 3688000 12999
Deletion Chr6 7687583 7687586 3
Deletion Chr6 8991001 9003000 11999
Deletion Chr12 9725001 9754000 28999 OsKitaake12g093700
Deletion Chr3 9996520 9996522 2
Deletion Chr12 11643001 11656000 12999
Deletion Chr12 11718018 11718183 165
Deletion Chr10 12044001 12053000 8999
Deletion Chr12 12654001 12670000 15999
Deletion Chr7 13701001 13727000 25999
Deletion Chr10 13827001 13848000 20999
Deletion Chr1 14033001 14046000 12999
Deletion Chr4 14038001 14050000 11999
Deletion Chr10 14644999 14645047 48
Deletion Chr9 15656901 15656902 1
Deletion Chr10 16378193 16378246 53
Deletion Chr11 17106001 17147000 40999 5
Deletion Chr1 17488001 17498000 9999
Deletion Chr6 19009001 19018000 8999
Deletion Chr5 19337001 19359000 21999
Deletion Chr7 22507001 22517000 9999 4
Deletion Chr7 22969001 22996000 26999
Deletion Chr8 24126001 24146000 19999
Deletion Chr4 24801936 24801937 1
Deletion Chr1 25051866 25051868 2
Deletion Chr2 25838001 25863000 24999
Deletion Chr8 27490001 27514000 23999
Deletion Chr2 29190001 29211000 20999
Deletion Chr1 30139001 30158000 18999
Deletion Chr2 34034001 34050000 15999
Deletion Chr4 35568001 35587000 18999

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 12224240 12224242 1
Insertion Chr8 8067714 8067716 1
Insertion Chr8 13431372 13431374 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 13233390 13538481
Inversion Chr10 13233399 13538754
Inversion Chr1 19130388 19311448
Inversion Chr1 19130393 19311470

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 1861109 Chr3 10041127
Translocation Chr7 1861297 Chr3 10034151 OsKitaake03g137300
Translocation Chr12 14626218 Chr5 19055320 OsKitaake05g149100
Translocation Chr12 14626974 Chr5 19055337 OsKitaake05g149100
Translocation Chr5 27944936 Chr3 10034141 OsKitaake03g137300
Translocation Chr5 27944941 Chr3 10041309

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17222618	C-A	Hetero	INTERGENIC
SBS	Chr2	8251393	G-A	Homo	INTERGENIC
SBS	Chr3	10063388	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g137500
SBS	Chr3	17753478	G-A	Hetero	INTERGENIC
SBS	Chr3	20317694	C-T	Homo	INTERGENIC
SBS	Chr3	29698812	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr4	2766811	C-T	Hetero	INTERGENIC
SBS	Chr5	2843147	G-A	Homo	INTERGENIC
SBS	Chr5	16816651	T-A	Hetero	INTRON
SBS	Chr5	25756513	A-T	Hetero	INTERGENIC
SBS	Chr7	1553350	T-G	Homo	INTERGENIC
SBS	Chr7	10692023	T-C	Homo	INTERGENIC
SBS	Chr8	29281371	A-G	Homo	INTERGENIC
SBS	Chr8	29281375	G-T	Homo	INTERGENIC
SBS	Chr10	1002286	G-C	Homo	INTERGENIC
SBS	Chr10	8515481	A-G	Hetero	INTRON
SBS	Chr10	14848979	G-A	Hetero	INTERGENIC
SBS	Chr11	5040435	C-T	Homo	INTERGENIC
SBS	Chr11	25338254	A-C	Hetero	INTERGENIC
SBS	Chr11	29108342	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	3675001	3688000	12999
Deletion	Chr6	7687583	7687586	3
Deletion	Chr6	8991001	9003000	11999
Deletion	Chr12	9725001	9754000	28999	OsKitaake12g093700
Deletion	Chr3	9996520	9996522	2
Deletion	Chr12	11643001	11656000	12999
Deletion	Chr12	11718018	11718183	165
Deletion	Chr10	12044001	12053000	8999
Deletion	Chr12	12654001	12670000	15999
Deletion	Chr7	13701001	13727000	25999
Deletion	Chr10	13827001	13848000	20999
Deletion	Chr1	14033001	14046000	12999
Deletion	Chr4	14038001	14050000	11999
Deletion	Chr10	14644999	14645047	48
Deletion	Chr9	15656901	15656902	1
Deletion	Chr10	16378193	16378246	53
Deletion	Chr11	17106001	17147000	40999	5
Deletion	Chr1	17488001	17498000	9999
Deletion	Chr6	19009001	19018000	8999
Deletion	Chr5	19337001	19359000	21999
Deletion	Chr7	22507001	22517000	9999	4
Deletion	Chr7	22969001	22996000	26999
Deletion	Chr8	24126001	24146000	19999
Deletion	Chr4	24801936	24801937	1
Deletion	Chr1	25051866	25051868	2
Deletion	Chr2	25838001	25863000	24999
Deletion	Chr8	27490001	27514000	23999
Deletion	Chr2	29190001	29211000	20999
Deletion	Chr1	30139001	30158000	18999
Deletion	Chr2	34034001	34050000	15999
Deletion	Chr4	35568001	35587000	18999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13233390	13538481
Inversion	Chr10	13233399	13538754
Inversion	Chr1	19130388	19311448
Inversion	Chr1	19130393	19311470

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes