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| Mutant Information |
|---|
| Mutant Name | FN564-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN564-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5225111 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 27023381 | C-A | Hetero | INTRON | |
| SBS | Chr1 | 33754891 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 24022075 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 24592708 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 5456487 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 29065141 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 12871849 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16474715 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18843064 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 10188289 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9793537 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 11303626 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 16241333 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 16241335 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23217999 | A-T | Homo | INTRON | |
| SBS | Chr8 | 28493795 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 7126473 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 4700465 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 5682063 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17144534 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 5667329 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g069400 |
| SBS | Chr11 | 8212951 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 10699034 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 12699359 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 15706705 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16705154 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21629039 | G-A | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 3766911 | 3766913 | 2 | |
| Deletion | Chr3 | 4803188 | 4803189 | 1 | |
| Deletion | Chr5 | 7326230 | 7326235 | 5 | |
| Deletion | Chr11 | 7643958 | 7643970 | 12 | |
| Deletion | Chr11 | 9324401 | 9324407 | 6 | |
| Deletion | Chr7 | 17652786 | 17652797 | 11 | |
| Deletion | Chr8 | 28491336 | 28491338 | 2 | |
| Deletion | Chr1 | 33178946 | 33178947 | 1 | OsKitaake01g338800 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 4060072 | 4060075 | 2 | |
| Insertion | Chr1 | 38734287 | 38734292 | 4 | |
| Insertion | Chr2 | 21014964 | 21014967 | 2 | |
| Insertion | Chr4 | 18297099 | 18297101 | 1 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 17925007 | Chr1 | 24897132 | |
| Translocation | Chr9 | 17931318 | Chr1 | 24897149 | |
| Translocation | Chr11 | 28386423 | Chr2 | 15517147 |