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Mutant Information

Mutant Name	FN601-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN601-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Very Low (Below 24%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 25673602 G-A Homo INTERGENIC
SBS Chr2 34898319 G-T Homo INTERGENIC
SBS Chr3 497376 C-T Homo INTERGENIC
SBS Chr3 9734463 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g132500
SBS Chr3 10802946 T-C Hetero INTERGENIC
SBS Chr3 20069511 A-G Hetero INTRON
SBS Chr3 28057065 G-C Hetero INTRON
SBS Chr3 35081654 A-G Hetero INTRON
SBS Chr4 1909690 C-T Hetero INTERGENIC
SBS Chr4 25568469 T-A Hetero INTRON
SBS Chr4 26352029 A-G Hetero UTR_5_PRIME
SBS Chr5 5923189 G-A Homo INTERGENIC
SBS Chr5 7365651 A-T Homo INTRON
SBS Chr5 19561659 T-C Hetero UTR_3_PRIME
SBS Chr6 2767397 T-A Hetero INTERGENIC
SBS Chr6 7686593 C-A Hetero INTERGENIC
SBS Chr6 15114185 G-A Hetero INTERGENIC
SBS Chr6 20032438 T-A Hetero INTERGENIC
SBS Chr7 8408317 T-C Homo INTERGENIC
SBS Chr7 18153653 C-T Hetero INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr7 28831021 A-T Hetero INTERGENIC
SBS Chr8 11376831 G-C Homo INTERGENIC
SBS Chr8 12634841 C-A Homo INTRON
SBS Chr8 18953881 C-A Homo INTRON
SBS Chr9 17060590 T-G Hetero UTR_3_PRIME
SBS Chr9 18733661 G-A Hetero INTERGENIC
SBS Chr9 20644994 A-G Hetero INTERGENIC
SBS Chr10 12596948 C-T Hetero INTERGENIC
SBS Chr12 6142221 G-C Hetero UTR_3_PRIME
SBS Chr12 12437448 T-G Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1602429 1602433 4
Deletion Chr3 2382740 2382742 2
Deletion Chr11 2450190 2450200 10
Deletion Chr1 3357856 3357862 6
Deletion Chr7 5216760 5216761 1 OsKitaake07g063800
Deletion Chr6 5963510 5963513 3
Deletion Chr11 8798001 8869000 70999 4
Deletion Chr12 9611428 9611429 1
Deletion Chr10 14370434 14370436 2
Deletion Chr7 15048315 15048324 9
Deletion Chr4 16948927 16948928 1
Deletion Chr5 22459994 22460002 8
Deletion Chr7 22755202 22755212 10
Deletion Chr4 23272935 23272952 17
Deletion Chr7 25457900 25457901 1
Deletion Chr7 26416261 26416270 9
Deletion Chr4 29673542 29673545 3
Deletion Chr2 33670817 33670818 1 OsKitaake02g348250

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 2593647 2593649 1 OsKitaake05g029400
Insertion Chr2 13778278 13778280 1
Insertion Chr6 14325535 14325593 57

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2692649 Chr9 20549301 OsKitaake09g173800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	25673602	G-A	Homo	INTERGENIC
SBS	Chr2	34898319	G-T	Homo	INTERGENIC
SBS	Chr3	497376	C-T	Homo	INTERGENIC
SBS	Chr3	9734463	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g132500
SBS	Chr3	10802946	T-C	Hetero	INTERGENIC
SBS	Chr3	20069511	A-G	Hetero	INTRON
SBS	Chr3	28057065	G-C	Hetero	INTRON
SBS	Chr3	35081654	A-G	Hetero	INTRON
SBS	Chr4	1909690	C-T	Hetero	INTERGENIC
SBS	Chr4	25568469	T-A	Hetero	INTRON
SBS	Chr4	26352029	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	5923189	G-A	Homo	INTERGENIC
SBS	Chr5	7365651	A-T	Homo	INTRON
SBS	Chr5	19561659	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	2767397	T-A	Hetero	INTERGENIC
SBS	Chr6	7686593	C-A	Hetero	INTERGENIC
SBS	Chr6	15114185	G-A	Hetero	INTERGENIC
SBS	Chr6	20032438	T-A	Hetero	INTERGENIC
SBS	Chr7	8408317	T-C	Homo	INTERGENIC
SBS	Chr7	18153653	C-T	Hetero	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr7	28831021	A-T	Hetero	INTERGENIC
SBS	Chr8	11376831	G-C	Homo	INTERGENIC
SBS	Chr8	12634841	C-A	Homo	INTRON
SBS	Chr8	18953881	C-A	Homo	INTRON
SBS	Chr9	17060590	T-G	Hetero	UTR_3_PRIME
SBS	Chr9	18733661	G-A	Hetero	INTERGENIC
SBS	Chr9	20644994	A-G	Hetero	INTERGENIC
SBS	Chr10	12596948	C-T	Hetero	INTERGENIC
SBS	Chr12	6142221	G-C	Hetero	UTR_3_PRIME
SBS	Chr12	12437448	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1602429	1602433	4
Deletion	Chr3	2382740	2382742	2
Deletion	Chr11	2450190	2450200	10
Deletion	Chr1	3357856	3357862	6
Deletion	Chr7	5216760	5216761	1	OsKitaake07g063800
Deletion	Chr6	5963510	5963513	3
Deletion	Chr11	8798001	8869000	70999	4
Deletion	Chr12	9611428	9611429	1
Deletion	Chr10	14370434	14370436	2
Deletion	Chr7	15048315	15048324	9
Deletion	Chr4	16948927	16948928	1
Deletion	Chr5	22459994	22460002	8
Deletion	Chr7	22755202	22755212	10
Deletion	Chr4	23272935	23272952	17
Deletion	Chr7	25457900	25457901	1
Deletion	Chr7	26416261	26416270	9
Deletion	Chr4	29673542	29673545	3
Deletion	Chr2	33670817	33670818	1	OsKitaake02g348250

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2692649	Chr9	20549301	OsKitaake09g173800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes