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| Mutant Information |
|---|
| Mutant Name | FN624-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN624-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6620720 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 6620726 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 19248445 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 19706718 | G-C | Homo | INTRON | |
| SBS | Chr1 | 19914232 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 42831083 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 2238109 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 25195010 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 1747002 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 2601585 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 4201423 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 28790542 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6561560 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 11627598 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 6334397 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 6334402 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 22399423 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 20413750 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 3198658 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4001072 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 13988642 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 12528327 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 23232216 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 5858369 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6518810 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 15520398 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 15520399 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 16645364 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 17863947 | T-C | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2704318 | 2704327 | 9 | |
| Deletion | Chr1 | 3352590 | 3352596 | 6 | OsKitaake01g044000 |
| Deletion | Chr10 | 3515569 | 3515570 | 1 | |
| Deletion | Chr7 | 3745799 | 3745803 | 4 | |
| Deletion | Chr1 | 7263232 | 7263239 | 7 | |
| Deletion | Chr12 | 9663504 | 9663509 | 5 | |
| Deletion | Chr7 | 10222302 | 10222305 | 3 | |
| Deletion | Chr6 | 13062507 | 13062508 | 1 | |
| Deletion | Chr10 | 13677001 | 13693000 | 15999 | 2 |
| Deletion | Chr5 | 14817958 | 14817967 | 9 | |
| Deletion | Chr10 | 15882340 | 15882341 | 1 | |
| Deletion | Chr5 | 16885602 | 16885616 | 14 | |
| Deletion | Chr2 | 21792251 | 21792259 | 8 | |
| Deletion | Chr7 | 22731669 | 22731671 | 2 | OsKitaake07g194800 |
| Deletion | Chr5 | 25669001 | 25938000 | 268999 | 37 |
| Deletion | Chr1 | 27960414 | 27960514 | 100 | |
| Deletion | Chr1 | 30710001 | 30737000 | 26999 | 2 |
| Deletion | Chr4 | 36913351 | 36913352 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 21632521 | 21632524 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 15151247 | 15178396 | 2 |
| Inversion | Chr2 | 17018778 | 17240059 | |
| Inversion | Chr1 | 27824595 | 28011725 | 2 |