Search Kitaake

Mutant Information

Mutant Name	FN633-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN633-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14472925 G-A Hetero INTERGENIC
SBS Chr1 21315867 T-C Hetero INTERGENIC
SBS Chr1 23980522 A-G Hetero INTERGENIC
SBS Chr1 28849232 G-A Hetero INTRON
SBS Chr2 22365704 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g216500
SBS Chr2 22365845 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g216500
SBS Chr2 32246467 T-G Homo INTERGENIC
SBS Chr2 36628382 T-G Homo INTERGENIC
SBS Chr3 26080683 C-T Hetero INTERGENIC
SBS Chr3 32018262 C-T Hetero INTERGENIC
SBS Chr4 15075651 C-T Homo INTERGENIC
SBS Chr6 13089390 C-T Homo INTERGENIC
SBS Chr7 27177057 T-C Homo INTERGENIC
SBS Chr7 27177205 A-G Homo INTERGENIC
SBS Chr7 27177213 C-T Homo INTERGENIC
SBS Chr8 1575244 T-C Homo INTERGENIC
SBS Chr8 22400604 G-C Hetero INTERGENIC
SBS Chr9 10351396 A-G Hetero INTERGENIC
SBS Chr11 2980937 G-A Hetero INTERGENIC
SBS Chr11 13612780 G-A Hetero UTR_3_PRIME
SBS Chr11 15863176 C-T Homo INTERGENIC
SBS Chr12 7528845 C-A Hetero INTERGENIC
SBS Chr12 7528847 G-A Hetero INTERGENIC
SBS Chr12 12106378 G-A Hetero INTERGENIC
SBS Chr12 12988473 G-C Hetero INTERGENIC
SBS Chr12 14357423 T-G Hetero INTERGENIC
SBS Chr12 21977366 T-C Hetero INTERGENIC
SBS Chr12 24210607 A-T Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1573669 1573677 8
Deletion Chr9 2573564 2573566 2
Deletion Chr3 3362171 3362180 9
Deletion Chr9 3700273 3700282 9
Deletion Chr3 5563837 5563848 11
Deletion Chr8 5682001 5748000 65999 8
Deletion Chr9 6869257 6869260 3
Deletion Chr12 7117001 7126000 8999 2
Deletion Chr11 7508350 7508351 1
Deletion Chr4 10099841 10099852 11
Deletion Chr4 14163895 14163897 2
Deletion Chr3 15382398 15382402 4
Deletion Chr11 15766606 15766607 1
Deletion Chr5 16002768 16002874 106
Deletion Chr11 17894215 17894218 3
Deletion Chr5 19123669 19123670 1
Deletion Chr9 21049408 21049409 1 OsKitaake09g180901
Deletion Chr2 30157056 30157058 2
Deletion Chr1 31482133 31482211 78 OsKitaake01g316000
Deletion Chr1 35387195 35387201 6 OsKitaake01g373200
Deletion Chr1 36202507 36202508 1
Deletion Chr1 41758207 41758208 1
Deletion Chr1 42809659 42809661 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 8005391 8005393 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 26780710 26781099

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 12431668 Chr2 19190655
Translocation Chr10 12440743 Chr2 20289260 OsKitaake02g197800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14472925	G-A	Hetero	INTERGENIC
SBS	Chr1	21315867	T-C	Hetero	INTERGENIC
SBS	Chr1	23980522	A-G	Hetero	INTERGENIC
SBS	Chr1	28849232	G-A	Hetero	INTRON
SBS	Chr2	22365704	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g216500
SBS	Chr2	22365845	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g216500
SBS	Chr2	32246467	T-G	Homo	INTERGENIC
SBS	Chr2	36628382	T-G	Homo	INTERGENIC
SBS	Chr3	26080683	C-T	Hetero	INTERGENIC
SBS	Chr3	32018262	C-T	Hetero	INTERGENIC
SBS	Chr4	15075651	C-T	Homo	INTERGENIC
SBS	Chr6	13089390	C-T	Homo	INTERGENIC
SBS	Chr7	27177057	T-C	Homo	INTERGENIC
SBS	Chr7	27177205	A-G	Homo	INTERGENIC
SBS	Chr7	27177213	C-T	Homo	INTERGENIC
SBS	Chr8	1575244	T-C	Homo	INTERGENIC
SBS	Chr8	22400604	G-C	Hetero	INTERGENIC
SBS	Chr9	10351396	A-G	Hetero	INTERGENIC
SBS	Chr11	2980937	G-A	Hetero	INTERGENIC
SBS	Chr11	13612780	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	15863176	C-T	Homo	INTERGENIC
SBS	Chr12	7528845	C-A	Hetero	INTERGENIC
SBS	Chr12	7528847	G-A	Hetero	INTERGENIC
SBS	Chr12	12106378	G-A	Hetero	INTERGENIC
SBS	Chr12	12988473	G-C	Hetero	INTERGENIC
SBS	Chr12	14357423	T-G	Hetero	INTERGENIC
SBS	Chr12	21977366	T-C	Hetero	INTERGENIC
SBS	Chr12	24210607	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1573669	1573677	8
Deletion	Chr9	2573564	2573566	2
Deletion	Chr3	3362171	3362180	9
Deletion	Chr9	3700273	3700282	9
Deletion	Chr3	5563837	5563848	11
Deletion	Chr8	5682001	5748000	65999	8
Deletion	Chr9	6869257	6869260	3
Deletion	Chr12	7117001	7126000	8999	2
Deletion	Chr11	7508350	7508351	1
Deletion	Chr4	10099841	10099852	11
Deletion	Chr4	14163895	14163897	2
Deletion	Chr3	15382398	15382402	4
Deletion	Chr11	15766606	15766607	1
Deletion	Chr5	16002768	16002874	106
Deletion	Chr11	17894215	17894218	3
Deletion	Chr5	19123669	19123670	1
Deletion	Chr9	21049408	21049409	1	OsKitaake09g180901
Deletion	Chr2	30157056	30157058	2
Deletion	Chr1	31482133	31482211	78	OsKitaake01g316000
Deletion	Chr1	35387195	35387201	6	OsKitaake01g373200
Deletion	Chr1	36202507	36202508	1
Deletion	Chr1	41758207	41758208	1
Deletion	Chr1	42809659	42809661	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	26780710	26781099

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes