Search Kitaake

Mutant Information

Mutant Name	FN671-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN671-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8597168 C-T Homo UTR_3_PRIME
SBS Chr1 16141756 G-A Homo INTERGENIC
SBS Chr1 17143025 G-T Hetero INTERGENIC
SBS Chr1 18586264 C-T Homo INTERGENIC
SBS Chr1 30800132 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g305000
SBS Chr3 221045 C-T Homo INTERGENIC
SBS Chr3 16732260 C-T Hetero INTERGENIC
SBS Chr3 26533913 G-A Hetero INTERGENIC
SBS Chr3 27025527 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 1039326 G-C Hetero INTERGENIC
SBS Chr4 4205562 A-G Hetero INTERGENIC
SBS Chr4 10252727 G-C Hetero INTERGENIC
SBS Chr4 17959239 T-G Hetero INTERGENIC
SBS Chr4 24834603 G-C Homo UTR_5_PRIME
SBS Chr5 19638223 T-G Hetero INTERGENIC
SBS Chr6 3153756 A-T Hetero INTERGENIC
SBS Chr6 9636122 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g113400
SBS Chr6 14948871 C-T Hetero INTERGENIC
SBS Chr6 20446752 C-T Hetero INTERGENIC
SBS Chr6 28252239 G-C Hetero INTERGENIC
SBS Chr7 7489074 A-C Homo INTERGENIC
SBS Chr7 7489075 C-A Homo INTERGENIC
SBS Chr7 12669533 C-G Homo INTERGENIC
SBS Chr7 12669537 A-G Homo INTERGENIC
SBS Chr8 3456650 T-C Hetero INTERGENIC
SBS Chr8 17031199 T-G Hetero INTERGENIC
SBS Chr9 4092074 C-G Hetero INTERGENIC
SBS Chr9 21409603 T-C Hetero INTERGENIC
SBS Chr10 4202984 C-A Hetero INTERGENIC
SBS Chr10 4202985 T-A Hetero INTERGENIC
SBS Chr10 4202986 G-T Hetero INTERGENIC
SBS Chr10 16494927 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g112000
SBS Chr10 16494928 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 8319618 C-A Hetero INTERGENIC
SBS Chr11 29596978 C-T Homo INTERGENIC
SBS Chr12 9724340 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g093700
SBS Chr12 20811182 T-G Homo SYNONYMOUS_CODING

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 452639 452644 5
Deletion Chr6 1424568 1424569 1
Deletion Chr12 12594001 12614000 19999 5
Deletion Chr1 14513903 14513909 6
Deletion Chr4 20652673 20652675 2
Deletion Chr6 20664020 20664022 2
Deletion Chr1 21412036 21412037 1
Deletion Chr6 22380414 22380416 2
Deletion Chr10 23402790 23402804 14
Deletion Chr4 27272815 27272823 8
Deletion Chr3 30082250 30082252 2
Deletion Chr1 43853580 43853586 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 6789229 6789232 2
Insertion Chr2 6961503 6961505 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8597168	C-T	Homo	UTR_3_PRIME
SBS	Chr1	16141756	G-A	Homo	INTERGENIC
SBS	Chr1	17143025	G-T	Hetero	INTERGENIC
SBS	Chr1	18586264	C-T	Homo	INTERGENIC
SBS	Chr1	30800132	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g305000
SBS	Chr3	221045	C-T	Homo	INTERGENIC
SBS	Chr3	16732260	C-T	Hetero	INTERGENIC
SBS	Chr3	26533913	G-A	Hetero	INTERGENIC
SBS	Chr3	27025527	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	1039326	G-C	Hetero	INTERGENIC
SBS	Chr4	4205562	A-G	Hetero	INTERGENIC
SBS	Chr4	10252727	G-C	Hetero	INTERGENIC
SBS	Chr4	17959239	T-G	Hetero	INTERGENIC
SBS	Chr4	24834603	G-C	Homo	UTR_5_PRIME
SBS	Chr5	19638223	T-G	Hetero	INTERGENIC
SBS	Chr6	3153756	A-T	Hetero	INTERGENIC
SBS	Chr6	9636122	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g113400
SBS	Chr6	14948871	C-T	Hetero	INTERGENIC
SBS	Chr6	20446752	C-T	Hetero	INTERGENIC
SBS	Chr6	28252239	G-C	Hetero	INTERGENIC
SBS	Chr7	7489074	A-C	Homo	INTERGENIC
SBS	Chr7	7489075	C-A	Homo	INTERGENIC
SBS	Chr7	12669533	C-G	Homo	INTERGENIC
SBS	Chr7	12669537	A-G	Homo	INTERGENIC
SBS	Chr8	3456650	T-C	Hetero	INTERGENIC
SBS	Chr8	17031199	T-G	Hetero	INTERGENIC
SBS	Chr9	4092074	C-G	Hetero	INTERGENIC
SBS	Chr9	21409603	T-C	Hetero	INTERGENIC
SBS	Chr10	4202984	C-A	Hetero	INTERGENIC
SBS	Chr10	4202985	T-A	Hetero	INTERGENIC
SBS	Chr10	4202986	G-T	Hetero	INTERGENIC
SBS	Chr10	16494927	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g112000
SBS	Chr10	16494928	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	8319618	C-A	Hetero	INTERGENIC
SBS	Chr11	29596978	C-T	Homo	INTERGENIC
SBS	Chr12	9724340	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g093700
SBS	Chr12	20811182	T-G	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	452639	452644	5
Deletion	Chr6	1424568	1424569	1
Deletion	Chr12	12594001	12614000	19999	5
Deletion	Chr1	14513903	14513909	6
Deletion	Chr4	20652673	20652675	2
Deletion	Chr6	20664020	20664022	2
Deletion	Chr1	21412036	21412037	1
Deletion	Chr6	22380414	22380416	2
Deletion	Chr10	23402790	23402804	14
Deletion	Chr4	27272815	27272823	8
Deletion	Chr3	30082250	30082252	2
Deletion	Chr1	43853580	43853586	6

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes