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Mutant Information

Mutant Name	FN672-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN672-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10492047 C-A Hetero INTERGENIC
SBS Chr1 34612588 G-A Homo INTERGENIC
SBS Chr1 35740567 A-G Homo INTRON
SBS Chr1 44111251 T-A Homo INTERGENIC
SBS Chr2 1165352 C-T Homo INTERGENIC
SBS Chr2 5062718 C-T Hetero INTERGENIC
SBS Chr2 10608518 G-A Hetero INTERGENIC
SBS Chr2 11347642 C-T Hetero INTERGENIC
SBS Chr2 24094694 C-T Homo INTERGENIC
SBS Chr2 24159694 A-T Homo INTERGENIC
SBS Chr3 7931256 A-T Hetero INTERGENIC
SBS Chr3 9986148 C-T Hetero INTERGENIC
SBS Chr3 20158870 G-C Homo INTERGENIC
SBS Chr3 27258890 C-T Hetero INTERGENIC
SBS Chr3 35731298 C-G Hetero INTERGENIC
SBS Chr4 8509135 T-C Hetero INTERGENIC
SBS Chr5 4494683 C-T Homo INTERGENIC
SBS Chr6 24849493 T-A Hetero INTERGENIC
SBS Chr6 24849494 T-C Hetero INTERGENIC
SBS Chr6 28340644 C-G Homo INTERGENIC
SBS Chr7 3713941 A-T Homo INTRON
SBS Chr7 7915156 T-C Hetero INTERGENIC
SBS Chr7 9333703 C-T Hetero INTERGENIC
SBS Chr7 9333705 G-C Hetero INTERGENIC
SBS Chr7 13833231 C-T Hetero INTERGENIC
SBS Chr7 18634746 C-T Hetero INTERGENIC
SBS Chr7 22197549 C-T Hetero INTERGENIC
SBS Chr8 25032377 G-A Hetero INTERGENIC
SBS Chr9 7796051 C-T Homo INTERGENIC
SBS Chr9 18153820 A-T Homo INTRON
SBS Chr10 17371895 C-A Homo INTERGENIC
SBS Chr11 10627084 C-T Hetero INTERGENIC
SBS Chr11 15527047 A-G Hetero SYNONYMOUS_CODING
SBS Chr12 9495334 G-T Hetero INTRON
SBS Chr12 10813086 C-A Hetero INTRON
SBS Chr12 12609103 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1986232 1986249 17
Deletion Chr7 3660520 3660522 2
Deletion Chr5 4451445 4451452 7
Deletion Chr7 6944001 7009000 64999 7
Deletion Chr7 7017001 7191000 173999 18
Deletion Chr7 9353001 9539000 185999 11
Deletion Chr9 11187819 11187829 10
Deletion Chr8 15510159 15510161 2
Deletion Chr5 15731763 15731764 1
Deletion Chr5 15745523 15745524 1
Deletion Chr12 18228601 18228603 2
Deletion Chr1 22755946 22755950 4
Deletion Chr1 38738346 38738396 50

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40181861 40181863 1 OsKitaake01g436200
Insertion Chr2 17273340 17273342 1
Insertion Chr12 13652663 13652665 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 9088667 9090980 2
Inversion Chr12 9088670 9090982 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 10384862 Chr3 8226804 2
Translocation Chr8 28683654 Chr5 24958540
Translocation Chr8 28683659 Chr5 24957990

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10492047	C-A	Hetero	INTERGENIC
SBS	Chr1	34612588	G-A	Homo	INTERGENIC
SBS	Chr1	35740567	A-G	Homo	INTRON
SBS	Chr1	44111251	T-A	Homo	INTERGENIC
SBS	Chr2	1165352	C-T	Homo	INTERGENIC
SBS	Chr2	5062718	C-T	Hetero	INTERGENIC
SBS	Chr2	10608518	G-A	Hetero	INTERGENIC
SBS	Chr2	11347642	C-T	Hetero	INTERGENIC
SBS	Chr2	24094694	C-T	Homo	INTERGENIC
SBS	Chr2	24159694	A-T	Homo	INTERGENIC
SBS	Chr3	7931256	A-T	Hetero	INTERGENIC
SBS	Chr3	9986148	C-T	Hetero	INTERGENIC
SBS	Chr3	20158870	G-C	Homo	INTERGENIC
SBS	Chr3	27258890	C-T	Hetero	INTERGENIC
SBS	Chr3	35731298	C-G	Hetero	INTERGENIC
SBS	Chr4	8509135	T-C	Hetero	INTERGENIC
SBS	Chr5	4494683	C-T	Homo	INTERGENIC
SBS	Chr6	24849493	T-A	Hetero	INTERGENIC
SBS	Chr6	24849494	T-C	Hetero	INTERGENIC
SBS	Chr6	28340644	C-G	Homo	INTERGENIC
SBS	Chr7	3713941	A-T	Homo	INTRON
SBS	Chr7	7915156	T-C	Hetero	INTERGENIC
SBS	Chr7	9333703	C-T	Hetero	INTERGENIC
SBS	Chr7	9333705	G-C	Hetero	INTERGENIC
SBS	Chr7	13833231	C-T	Hetero	INTERGENIC
SBS	Chr7	18634746	C-T	Hetero	INTERGENIC
SBS	Chr7	22197549	C-T	Hetero	INTERGENIC
SBS	Chr8	25032377	G-A	Hetero	INTERGENIC
SBS	Chr9	7796051	C-T	Homo	INTERGENIC
SBS	Chr9	18153820	A-T	Homo	INTRON
SBS	Chr10	17371895	C-A	Homo	INTERGENIC
SBS	Chr11	10627084	C-T	Hetero	INTERGENIC
SBS	Chr11	15527047	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	9495334	G-T	Hetero	INTRON
SBS	Chr12	10813086	C-A	Hetero	INTRON
SBS	Chr12	12609103	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1986232	1986249	17
Deletion	Chr7	3660520	3660522	2
Deletion	Chr5	4451445	4451452	7
Deletion	Chr7	6944001	7009000	64999	7
Deletion	Chr7	7017001	7191000	173999	18
Deletion	Chr7	9353001	9539000	185999	11
Deletion	Chr9	11187819	11187829	10
Deletion	Chr8	15510159	15510161	2
Deletion	Chr5	15731763	15731764	1
Deletion	Chr5	15745523	15745524	1
Deletion	Chr12	18228601	18228603	2
Deletion	Chr1	22755946	22755950	4
Deletion	Chr1	38738346	38738396	50

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	9088667	9090980	2
Inversion	Chr12	9088670	9090982	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes