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Mutant Information

Mutant Name	FN673-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN673-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11675654 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g140800
SBS Chr1 21616904 C-A Homo INTERGENIC
SBS Chr2 377154 G-A Hetero INTERGENIC
SBS Chr2 377155 A-T Hetero INTERGENIC
SBS Chr2 6471286 C-T Hetero INTRON
SBS Chr2 14197040 C-G Hetero INTERGENIC
SBS Chr2 24452022 C-T Homo INTERGENIC
SBS Chr2 30812252 G-A Hetero INTERGENIC
SBS Chr3 9832661 G-T Homo INTRON
SBS Chr3 34425196 C-T Homo INTERGENIC
SBS Chr4 28087754 A-G Homo INTERGENIC
SBS Chr5 11975757 C-T Homo INTERGENIC
SBS Chr5 14605907 G-A Hetero INTERGENIC
SBS Chr5 14605908 C-A Hetero INTERGENIC
SBS Chr5 20440969 T-C Homo INTERGENIC
SBS Chr5 20440972 G-T Homo INTERGENIC
SBS Chr5 20440973 T-A Homo INTERGENIC
SBS Chr6 10800034 G-A Homo UTR_3_PRIME
SBS Chr6 13234351 C-T Hetero INTERGENIC
SBS Chr6 20997480 A-T Homo INTRON
SBS Chr7 8387715 A-G Homo INTERGENIC
SBS Chr7 26710843 T-A Hetero INTERGENIC
SBS Chr8 3835949 G-A Homo INTERGENIC
SBS Chr8 25366134 A-C Hetero INTERGENIC
SBS Chr8 29157749 A-G Hetero INTRON
SBS Chr9 2554800 G-A Hetero INTERGENIC
SBS Chr9 5584170 C-T Hetero INTERGENIC
SBS Chr9 22358649 C-T Hetero INTERGENIC
SBS Chr10 891585 C-T Homo INTERGENIC
SBS Chr10 7707566 G-C Homo INTERGENIC
SBS Chr10 7879433 G-A Homo INTERGENIC
SBS Chr10 11300822 T-G Homo INTERGENIC
SBS Chr11 7624368 G-T Homo INTERGENIC
SBS Chr11 11507145 C-A Hetero INTERGENIC
SBS Chr11 20590956 A-T Homo INTERGENIC
SBS Chr12 7721032 A-T Hetero INTERGENIC
SBS Chr12 10433076 G-A Homo INTERGENIC
SBS Chr12 18989312 T-A Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 24114 24115 1
Deletion Chr12 574573 574575 2
Deletion Chr9 1267243 1267246 3
Deletion Chr5 1743326 1743330 4
Deletion Chr6 4752175 4752176 1
Deletion Chr6 6271001 6303000 31999
Deletion Chr2 7097646 7097654 8
Deletion Chr7 7300988 7300991 3
Deletion Chr7 9108067 9108079 12
Deletion Chr9 9127567 9127568 1
Deletion Chr1 11354001 11494000 139999 12
Deletion Chr12 11716620 11716785 165
Deletion Chr2 14175825 14175826 1
Deletion Chr5 14611949 14611962 13
Deletion Chr5 15401742 15401743 1
Deletion Chr7 18906381 18906383 2
Deletion Chr7 19848480 19848493 13 OsKitaake07g162100
Deletion Chr10 22365107 22365109 2
Deletion Chr10 23852207 23852210 3
Deletion Chr4 27902209 27902211 2
Deletion Chr1 29842383 29842387 4
Deletion Chr4 30405165 30405173 8
Deletion Chr1 31642429 31642430 1
Deletion Chr1 43616957 43616958 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18229129 18229132 2
Insertion Chr12 9120657 9120661 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 6139235 6310017 OsKitaake11g073900
Inversion Chr2 12325030 13017688 OsKitaake02g138700
Inversion Chr2 12325038 13017686 OsKitaake02g138700

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 4478233 Chr1 11490527
Translocation Chr3 4478241 Chr1 11491088
Translocation Chr11 6139236 Chr1 11500173 OsKitaake11g073900
Translocation Chr11 6310022 Chr1 11491093

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11675654	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g140800
SBS	Chr1	21616904	C-A	Homo	INTERGENIC
SBS	Chr2	377154	G-A	Hetero	INTERGENIC
SBS	Chr2	377155	A-T	Hetero	INTERGENIC
SBS	Chr2	6471286	C-T	Hetero	INTRON
SBS	Chr2	14197040	C-G	Hetero	INTERGENIC
SBS	Chr2	24452022	C-T	Homo	INTERGENIC
SBS	Chr2	30812252	G-A	Hetero	INTERGENIC
SBS	Chr3	9832661	G-T	Homo	INTRON
SBS	Chr3	34425196	C-T	Homo	INTERGENIC
SBS	Chr4	28087754	A-G	Homo	INTERGENIC
SBS	Chr5	11975757	C-T	Homo	INTERGENIC
SBS	Chr5	14605907	G-A	Hetero	INTERGENIC
SBS	Chr5	14605908	C-A	Hetero	INTERGENIC
SBS	Chr5	20440969	T-C	Homo	INTERGENIC
SBS	Chr5	20440972	G-T	Homo	INTERGENIC
SBS	Chr5	20440973	T-A	Homo	INTERGENIC
SBS	Chr6	10800034	G-A	Homo	UTR_3_PRIME
SBS	Chr6	13234351	C-T	Hetero	INTERGENIC
SBS	Chr6	20997480	A-T	Homo	INTRON
SBS	Chr7	8387715	A-G	Homo	INTERGENIC
SBS	Chr7	26710843	T-A	Hetero	INTERGENIC
SBS	Chr8	3835949	G-A	Homo	INTERGENIC
SBS	Chr8	25366134	A-C	Hetero	INTERGENIC
SBS	Chr8	29157749	A-G	Hetero	INTRON
SBS	Chr9	2554800	G-A	Hetero	INTERGENIC
SBS	Chr9	5584170	C-T	Hetero	INTERGENIC
SBS	Chr9	22358649	C-T	Hetero	INTERGENIC
SBS	Chr10	891585	C-T	Homo	INTERGENIC
SBS	Chr10	7707566	G-C	Homo	INTERGENIC
SBS	Chr10	7879433	G-A	Homo	INTERGENIC
SBS	Chr10	11300822	T-G	Homo	INTERGENIC
SBS	Chr11	7624368	G-T	Homo	INTERGENIC
SBS	Chr11	11507145	C-A	Hetero	INTERGENIC
SBS	Chr11	20590956	A-T	Homo	INTERGENIC
SBS	Chr12	7721032	A-T	Hetero	INTERGENIC
SBS	Chr12	10433076	G-A	Homo	INTERGENIC
SBS	Chr12	18989312	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	24114	24115	1
Deletion	Chr12	574573	574575	2
Deletion	Chr9	1267243	1267246	3
Deletion	Chr5	1743326	1743330	4
Deletion	Chr6	4752175	4752176	1
Deletion	Chr6	6271001	6303000	31999
Deletion	Chr2	7097646	7097654	8
Deletion	Chr7	7300988	7300991	3
Deletion	Chr7	9108067	9108079	12
Deletion	Chr9	9127567	9127568	1
Deletion	Chr1	11354001	11494000	139999	12
Deletion	Chr12	11716620	11716785	165
Deletion	Chr2	14175825	14175826	1
Deletion	Chr5	14611949	14611962	13
Deletion	Chr5	15401742	15401743	1
Deletion	Chr7	18906381	18906383	2
Deletion	Chr7	19848480	19848493	13	OsKitaake07g162100
Deletion	Chr10	22365107	22365109	2
Deletion	Chr10	23852207	23852210	3
Deletion	Chr4	27902209	27902211	2
Deletion	Chr1	29842383	29842387	4
Deletion	Chr4	30405165	30405173	8
Deletion	Chr1	31642429	31642430	1
Deletion	Chr1	43616957	43616958	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	6139235	6310017	OsKitaake11g073900
Inversion	Chr2	12325030	13017688	OsKitaake02g138700
Inversion	Chr2	12325038	13017686	OsKitaake02g138700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes