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Mutant Information

Mutant Name	FN677-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN677-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5293628 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g068700
SBS Chr1 17684492 G-C Hetero INTRON
SBS Chr1 18973271 G-T Hetero INTERGENIC
SBS Chr2 2213734 G-T Homo INTRON
SBS Chr2 22252556 G-A Hetero INTERGENIC
SBS Chr2 22452080 C-T Hetero INTRON
SBS Chr3 11490016 T-C Homo INTERGENIC
SBS Chr3 37445863 G-A Hetero INTERGENIC
SBS Chr4 9067893 G-A Hetero INTERGENIC
SBS Chr4 18223759 G-A Hetero INTERGENIC
SBS Chr4 36698573 T-G Hetero INTERGENIC
SBS Chr5 30162235 C-T Hetero INTERGENIC
SBS Chr6 230342 C-T Hetero INTERGENIC
SBS Chr6 15938830 C-G Hetero INTERGENIC
SBS Chr6 20904010 G-C Homo UTR_3_PRIME
SBS Chr8 11962294 T-A Homo INTERGENIC
SBS Chr9 14783508 C-T Homo SYNONYMOUS_CODING
SBS Chr11 5832490 T-C Homo INTERGENIC
SBS Chr11 12843286 C-A Hetero INTERGENIC
SBS Chr11 19148496 A-T Hetero INTERGENIC
SBS Chr11 19884890 G-A Homo INTERGENIC
SBS Chr11 26134317 T-C Hetero INTERGENIC
SBS Chr12 6042844 G-A Hetero INTERGENIC
SBS Chr12 10691684 C-T Homo INTERGENIC
SBS Chr12 18179226 T-G Hetero INTERGENIC
SBS Chr12 23049065 T-G Hetero SYNONYMOUS_CODING

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 121048 121056 8
Deletion Chr2 996252 996263 11 OsKitaake02g014300
Deletion Chr9 1099951 1099957 6
Deletion Chr11 3093955 3093963 8
Deletion Chr8 3640042 3640043 1
Deletion Chr10 13206832 13206845 13
Deletion Chr2 17483001 17493000 9999 OsKitaake02g175700
Deletion Chr2 20550466 20550788 322
Deletion Chr6 21194029 21194031 2
Deletion Chr5 23268781 23268783 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10558339 10558342 2
Insertion Chr8 10248688 10248691 2
Insertion Chr3 30636054 30636057 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 17566384 Chr2 18200089 OsKitaake09g132500
Translocation Chr9 17566389 Chr2 18201980 OsKitaake09g132500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5293628	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g068700
SBS	Chr1	17684492	G-C	Hetero	INTRON
SBS	Chr1	18973271	G-T	Hetero	INTERGENIC
SBS	Chr2	2213734	G-T	Homo	INTRON
SBS	Chr2	22252556	G-A	Hetero	INTERGENIC
SBS	Chr2	22452080	C-T	Hetero	INTRON
SBS	Chr3	11490016	T-C	Homo	INTERGENIC
SBS	Chr3	37445863	G-A	Hetero	INTERGENIC
SBS	Chr4	9067893	G-A	Hetero	INTERGENIC
SBS	Chr4	18223759	G-A	Hetero	INTERGENIC
SBS	Chr4	36698573	T-G	Hetero	INTERGENIC
SBS	Chr5	30162235	C-T	Hetero	INTERGENIC
SBS	Chr6	230342	C-T	Hetero	INTERGENIC
SBS	Chr6	15938830	C-G	Hetero	INTERGENIC
SBS	Chr6	20904010	G-C	Homo	UTR_3_PRIME
SBS	Chr8	11962294	T-A	Homo	INTERGENIC
SBS	Chr9	14783508	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	5832490	T-C	Homo	INTERGENIC
SBS	Chr11	12843286	C-A	Hetero	INTERGENIC
SBS	Chr11	19148496	A-T	Hetero	INTERGENIC
SBS	Chr11	19884890	G-A	Homo	INTERGENIC
SBS	Chr11	26134317	T-C	Hetero	INTERGENIC
SBS	Chr12	6042844	G-A	Hetero	INTERGENIC
SBS	Chr12	10691684	C-T	Homo	INTERGENIC
SBS	Chr12	18179226	T-G	Hetero	INTERGENIC
SBS	Chr12	23049065	T-G	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	121048	121056	8
Deletion	Chr2	996252	996263	11	OsKitaake02g014300
Deletion	Chr9	1099951	1099957	6
Deletion	Chr11	3093955	3093963	8
Deletion	Chr8	3640042	3640043	1
Deletion	Chr10	13206832	13206845	13
Deletion	Chr2	17483001	17493000	9999	OsKitaake02g175700
Deletion	Chr2	20550466	20550788	322
Deletion	Chr6	21194029	21194031	2
Deletion	Chr5	23268781	23268783	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17566384	Chr2	18200089	OsKitaake09g132500
Translocation	Chr9	17566389	Chr2	18201980	OsKitaake09g132500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes