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| Mutant Information |
|---|
| Mutant Name | FN679-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN679-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22276392 | C-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 33650858 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 19911317 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 3069085 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 6436842 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 20514492 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 20747707 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 27452061 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 12562242 | C-G | Homo | INTRON | |
| SBS | Chr4 | 22570672 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 35998330 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24125601 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14385067 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 15105498 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 21892169 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26718303 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 21546601 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 23733870 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 2180442 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 10862494 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 3586044 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 16278166 | A-T | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 764963 | 764965 | 2 | OsKitaake07g009400 |
| Deletion | Chr3 | 2320189 | 2320197 | 8 | |
| Deletion | Chr10 | 3618492 | 3618493 | 1 | |
| Deletion | Chr2 | 3695001 | 3724000 | 28999 | 2 |
| Deletion | Chr10 | 10104428 | 10104430 | 2 | |
| Deletion | Chr7 | 18756649 | 18756651 | 2 | |
| Deletion | Chr12 | 22819236 | 22819237 | 1 | |
| Deletion | Chr2 | 28716854 | 28716863 | 9 | |
| Deletion | Chr1 | 42657467 | 42657475 | 8 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 1751033 | 1751036 | 2 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 13930942 | Chr10 | 8624438 | |
| Translocation | Chr12 | 18411815 | Chr4 | 34535201 | OsKitaake04g287800 |
| Translocation | Chr12 | 18413850 | Chr4 | 34535217 | 2 |
| Translocation | Chr5 | 27252125 | Chr1 | 33651255 | |
| Translocation | Chr5 | 27252132 | Chr1 | 33644553 | OsKitaake01g344800 |