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Mutant Information

Mutant Name	FN680-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN680-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5036645 A-C Homo INTERGENIC
SBS Chr1 5036647 A-T Homo INTERGENIC
SBS Chr1 5036649 A-T Homo INTERGENIC
SBS Chr1 15616899 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g170300
SBS Chr1 20017975 C-A Hetero INTERGENIC
SBS Chr1 28576557 G-A Homo INTRON
SBS Chr2 5408231 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g074200
SBS Chr3 2228158 C-A Homo INTERGENIC
SBS Chr3 3273941 T-A Homo INTERGENIC
SBS Chr3 14674622 C-T Homo INTERGENIC
SBS Chr3 23845634 C-T Hetero INTERGENIC
SBS Chr3 27595179 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g285200
SBS Chr3 33331840 G-T Hetero INTERGENIC
SBS Chr4 27168282 A-T Hetero INTERGENIC
SBS Chr4 32270631 T-A Hetero INTERGENIC
SBS Chr5 12314225 C-T Homo INTERGENIC
SBS Chr5 19348479 T-A Hetero INTERGENIC
SBS Chr5 19350900 C-T Hetero INTERGENIC
SBS Chr6 7993776 C-G Hetero UTR_3_PRIME
SBS Chr6 24869060 C-A Homo INTRON
SBS Chr7 10404372 G-A Hetero INTERGENIC
SBS Chr7 21217971 G-A Hetero INTERGENIC
SBS Chr8 4458417 G-T Hetero SYNONYMOUS_CODING
SBS Chr8 8282147 C-T Homo INTERGENIC
SBS Chr9 6267058 C-T Homo INTERGENIC
SBS Chr10 13064602 G-A Homo SPLICE_SITE_ACCEPTOR OsKitaake10g079500
SBS Chr11 12843737 T-C Homo INTERGENIC
SBS Chr11 12857605 G-A Homo INTERGENIC
SBS Chr11 13054562 G-A Homo INTERGENIC
SBS Chr11 13461757 G-A Homo INTERGENIC
SBS Chr12 10442081 G-A Hetero INTRON
SBS Chr12 12714521 A-G Hetero INTERGENIC
SBS Chr12 14426207 C-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 4649935 4649937 2
Deletion Chr9 7368001 7612000 243999 8
Deletion Chr8 8283128 8283133 5
Deletion Chr7 8683538 8683539 1
Deletion Chr1 9319795 9319801 6
Deletion Chr11 13021713 13021718 5
Deletion Chr4 15196429 15196430 1
Deletion Chr5 21820002 21820003 1
Deletion Chr6 22147216 22147225 9
Deletion Chr3 25426699 25426702 3
Deletion Chr2 29292738 29292740 2
Deletion Chr5 30258420 30258421 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36723632 36723635 2
Insertion Chr3 14158416 14158419 2
Insertion Chr10 19018105 19018108 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 16039622 16810924 OsKitaake07g137900
Inversion Chr7 16039671 16810943 OsKitaake07g137900
Inversion Chr12 21009510 21133843 OsKitaake12g164500
Inversion Chr12 21009512 21133891 OsKitaake12g164500

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7613760 Chr1 15099574
Translocation Chr9 7613871 Chr1 15099471
Translocation Chr5 20441750 Chr2 32926094 OsKitaake02g338300
Translocation Chr5 20470086 Chr2 32926091 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5036645	A-C	Homo	INTERGENIC
SBS	Chr1	5036647	A-T	Homo	INTERGENIC
SBS	Chr1	5036649	A-T	Homo	INTERGENIC
SBS	Chr1	15616899	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g170300
SBS	Chr1	20017975	C-A	Hetero	INTERGENIC
SBS	Chr1	28576557	G-A	Homo	INTRON
SBS	Chr2	5408231	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g074200
SBS	Chr3	2228158	C-A	Homo	INTERGENIC
SBS	Chr3	3273941	T-A	Homo	INTERGENIC
SBS	Chr3	14674622	C-T	Homo	INTERGENIC
SBS	Chr3	23845634	C-T	Hetero	INTERGENIC
SBS	Chr3	27595179	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g285200
SBS	Chr3	33331840	G-T	Hetero	INTERGENIC
SBS	Chr4	27168282	A-T	Hetero	INTERGENIC
SBS	Chr4	32270631	T-A	Hetero	INTERGENIC
SBS	Chr5	12314225	C-T	Homo	INTERGENIC
SBS	Chr5	19348479	T-A	Hetero	INTERGENIC
SBS	Chr5	19350900	C-T	Hetero	INTERGENIC
SBS	Chr6	7993776	C-G	Hetero	UTR_3_PRIME
SBS	Chr6	24869060	C-A	Homo	INTRON
SBS	Chr7	10404372	G-A	Hetero	INTERGENIC
SBS	Chr7	21217971	G-A	Hetero	INTERGENIC
SBS	Chr8	4458417	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	8282147	C-T	Homo	INTERGENIC
SBS	Chr9	6267058	C-T	Homo	INTERGENIC
SBS	Chr10	13064602	G-A	Homo	SPLICE_SITE_ACCEPTOR	OsKitaake10g079500
SBS	Chr11	12843737	T-C	Homo	INTERGENIC
SBS	Chr11	12857605	G-A	Homo	INTERGENIC
SBS	Chr11	13054562	G-A	Homo	INTERGENIC
SBS	Chr11	13461757	G-A	Homo	INTERGENIC
SBS	Chr12	10442081	G-A	Hetero	INTRON
SBS	Chr12	12714521	A-G	Hetero	INTERGENIC
SBS	Chr12	14426207	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	4649935	4649937	2
Deletion	Chr9	7368001	7612000	243999	8
Deletion	Chr8	8283128	8283133	5
Deletion	Chr7	8683538	8683539	1
Deletion	Chr1	9319795	9319801	6
Deletion	Chr11	13021713	13021718	5
Deletion	Chr4	15196429	15196430	1
Deletion	Chr5	21820002	21820003	1
Deletion	Chr6	22147216	22147225	9
Deletion	Chr3	25426699	25426702	3
Deletion	Chr2	29292738	29292740	2
Deletion	Chr5	30258420	30258421	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	16039622	16810924	OsKitaake07g137900
Inversion	Chr7	16039671	16810943	OsKitaake07g137900
Inversion	Chr12	21009510	21133843	OsKitaake12g164500
Inversion	Chr12	21009512	21133891	OsKitaake12g164500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes