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| Mutant Information |
|---|
| Mutant Name | FN681-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN681-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18560284 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 33552256 | A-C | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 22499004 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25008380 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 2792151 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 16178387 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 20558311 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 26102584 | A-T | Homo | INTRON | |
| SBS | Chr3 | 29158074 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 30084677 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 33544689 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 15023864 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 35254136 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25145256 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g226200 |
| SBS | Chr7 | 25617314 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 7231685 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 566516 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3199363 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 18006694 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 12295223 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13885504 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19567172 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g152500 |
| SBS | Chr11 | 20189799 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 23103827 | G-A | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 5912301 | 5912312 | 11 | |
| Deletion | Chr11 | 7477182 | 7477183 | 1 | OsKitaake11g084366 |
| Deletion | Chr2 | 7615910 | 7615914 | 4 | |
| Deletion | Chr3 | 8335660 | 8335664 | 4 | |
| Deletion | Chr5 | 8617708 | 8617710 | 2 | |
| Deletion | Chr7 | 10357398 | 10357413 | 15 | |
| Deletion | Chr9 | 13607877 | 13607878 | 1 | |
| Deletion | Chr9 | 13730327 | 13730337 | 10 | |
| Deletion | Chr5 | 17112220 | 17112221 | 1 | |
| Deletion | Chr3 | 18111089 | 18111093 | 4 | |
| Deletion | Chr10 | 21600596 | 21600602 | 6 | |
| Deletion | Chr2 | 22005848 | 22005850 | 2 | |
| Deletion | Chr1 | 26111001 | 26135000 | 23999 | 7 |
| Deletion | Chr6 | 26664582 | 26664592 | 10 | |
| Deletion | Chr3 | 27247804 | 27247812 | 8 | |
| Deletion | Chr3 | 30608021 | 30608030 | 9 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 19291701 | 19291704 | 2 | |
| Insertion | Chr10 | 17828134 | 17828136 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 32128268 | 32657902 | |
| Inversion | Chr4 | 32128271 | 32657906 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 7358800 | Chr4 | 15023734 | |
| Translocation | Chr12 | 7358958 | Chr4 | 15024081 | |
| Translocation | Chr9 | 18040860 | Chr8 | 27398249 | OsKitaake08g225600 |
| Translocation | Chr9 | 18061681 | Chr8 | 27398245 | OsKitaake08g225600 |