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| Mutant Information |
|---|
| Mutant Name | FN682-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN682-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 31733103 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 30489812 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g310800 |
| SBS | Chr3 | 634975 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 3252696 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7296924 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9053580 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 19986602 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 6437671 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 28068255 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 28323375 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 4954988 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 7962025 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 20705024 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 10641455 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12360897 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 27423663 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g226100 |
| SBS | Chr8 | 28683884 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16301869 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 4724409 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 10510221 | T-G | Hetero | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 1439619 | 1439640 | 21 | |
| Deletion | Chr7 | 21990099 | 21990119 | 20 | |
| Deletion | Chr9 | 22698527 | 22698542 | 15 | |
| Deletion | Chr3 | 35631521 | 35631522 | 1 | OsKitaake03g391100 |
| Deletion | Chr1 | 36784784 | 36784805 | 21 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 21760321 | 21760324 | 2 | |
| Insertion | Chr5 | 16412157 | 16412161 | 3 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 20179880 | 20537341 | OsKitaake01g200800 |
| Inversion | Chr1 | 20179893 | 20537349 | OsKitaake01g200800 |