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Mutant Information

Mutant Name	FN683-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN683-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 2

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr9 7978287 C-T Hetero INTERGENIC
SBS Chr10 4508722 C-T Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 7105 7456 351
Deletion Chr6 20692 21044 352
Deletion Chr2 9281972 9281973 1
Deletion Chr1 34302001 34335000 32999 7
Deletion Chr1 41401001 41438000 36999 6

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr9	7978287	C-T	Hetero	INTERGENIC
SBS	Chr10	4508722	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	7105	7456	351
Deletion	Chr6	20692	21044	352
Deletion	Chr2	9281972	9281973	1
Deletion	Chr1	34302001	34335000	32999	7
Deletion	Chr1	41401001	41438000	36999	6

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes