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Mutant Information

Mutant Name	FN687-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN687-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3634995 A-T Hetero INTERGENIC
SBS Chr1 6941119 C-T Hetero INTERGENIC
SBS Chr1 8937590 G-T Homo INTERGENIC
SBS Chr1 13304514 A-T Hetero INTERGENIC
SBS Chr1 22250166 T-C Hetero INTERGENIC
SBS Chr1 23178330 T-G Hetero INTRON
SBS Chr1 29959487 A-T Hetero INTERGENIC
SBS Chr2 29168369 T-G Hetero INTERGENIC
SBS Chr2 35862097 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g377600
SBS Chr3 8331464 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g114800
SBS Chr3 9101287 C-A Hetero INTERGENIC
SBS Chr3 11888091 T-G Hetero INTERGENIC
SBS Chr3 16799628 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g210700
SBS Chr3 27268480 T-C Hetero INTERGENIC
SBS Chr3 31025504 G-A Homo INTRON
SBS Chr4 11205325 T-A Hetero INTERGENIC
SBS Chr4 12761717 G-A Hetero INTRON
SBS Chr5 2304049 T-G Hetero INTERGENIC
SBS Chr5 17866059 A-C Homo INTERGENIC
SBS Chr5 24265857 A-T Hetero INTERGENIC
SBS Chr6 12973315 T-C Hetero INTERGENIC
SBS Chr6 16373500 T-C Hetero INTERGENIC
SBS Chr6 20054475 C-T Hetero INTERGENIC
SBS Chr6 26559708 T-C Hetero INTERGENIC
SBS Chr7 16826168 A-G Hetero INTRON
SBS Chr7 17170116 C-T Hetero INTERGENIC
SBS Chr8 15543878 G-A Hetero INTERGENIC
SBS Chr8 20133682 G-A Hetero INTERGENIC
SBS Chr8 20133683 G-A Hetero INTERGENIC
SBS Chr8 20948760 G-T Hetero SYNONYMOUS_CODING
SBS Chr8 22750789 C-A Hetero INTRON
SBS Chr8 28732929 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g246700
SBS Chr10 19036185 G-A Hetero INTERGENIC
SBS Chr11 12613807 C-T Hetero INTERGENIC
SBS Chr12 2777414 T-C Hetero INTRON
SBS Chr12 6411118 G-A Hetero INTERGENIC
SBS Chr12 17792151 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2146850 2146855 5
Deletion Chr10 2771629 2771631 2
Deletion Chr10 3397707 3397708 1
Deletion Chr1 10510806 10510810 4
Deletion Chr7 10752393 10752394 1
Deletion Chr8 14496451 14496457 6
Deletion Chr11 17717882 17718008 126
Deletion Chr12 21826641 21826722 81
Deletion Chr1 23149555 23149556 1
Deletion Chr11 24861001 24883000 21999 2
Deletion Chr6 25934197 25934201 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18184126 18184129 2
Insertion Chr3 24114556 24114559 2
Insertion Chr10 15083225 15083228 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 9055808 9204565 OsKitaake04g047200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 29259123 Chr4 29994280 OsKitaake05g277600
Translocation Chr5 29259134 Chr4 29994878 OsKitaake05g277600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3634995	A-T	Hetero	INTERGENIC
SBS	Chr1	6941119	C-T	Hetero	INTERGENIC
SBS	Chr1	8937590	G-T	Homo	INTERGENIC
SBS	Chr1	13304514	A-T	Hetero	INTERGENIC
SBS	Chr1	22250166	T-C	Hetero	INTERGENIC
SBS	Chr1	23178330	T-G	Hetero	INTRON
SBS	Chr1	29959487	A-T	Hetero	INTERGENIC
SBS	Chr2	29168369	T-G	Hetero	INTERGENIC
SBS	Chr2	35862097	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g377600
SBS	Chr3	8331464	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g114800
SBS	Chr3	9101287	C-A	Hetero	INTERGENIC
SBS	Chr3	11888091	T-G	Hetero	INTERGENIC
SBS	Chr3	16799628	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g210700
SBS	Chr3	27268480	T-C	Hetero	INTERGENIC
SBS	Chr3	31025504	G-A	Homo	INTRON
SBS	Chr4	11205325	T-A	Hetero	INTERGENIC
SBS	Chr4	12761717	G-A	Hetero	INTRON
SBS	Chr5	2304049	T-G	Hetero	INTERGENIC
SBS	Chr5	17866059	A-C	Homo	INTERGENIC
SBS	Chr5	24265857	A-T	Hetero	INTERGENIC
SBS	Chr6	12973315	T-C	Hetero	INTERGENIC
SBS	Chr6	16373500	T-C	Hetero	INTERGENIC
SBS	Chr6	20054475	C-T	Hetero	INTERGENIC
SBS	Chr6	26559708	T-C	Hetero	INTERGENIC
SBS	Chr7	16826168	A-G	Hetero	INTRON
SBS	Chr7	17170116	C-T	Hetero	INTERGENIC
SBS	Chr8	15543878	G-A	Hetero	INTERGENIC
SBS	Chr8	20133682	G-A	Hetero	INTERGENIC
SBS	Chr8	20133683	G-A	Hetero	INTERGENIC
SBS	Chr8	20948760	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	22750789	C-A	Hetero	INTRON
SBS	Chr8	28732929	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g246700
SBS	Chr10	19036185	G-A	Hetero	INTERGENIC
SBS	Chr11	12613807	C-T	Hetero	INTERGENIC
SBS	Chr12	2777414	T-C	Hetero	INTRON
SBS	Chr12	6411118	G-A	Hetero	INTERGENIC
SBS	Chr12	17792151	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2146850	2146855	5
Deletion	Chr10	2771629	2771631	2
Deletion	Chr10	3397707	3397708	1
Deletion	Chr1	10510806	10510810	4
Deletion	Chr7	10752393	10752394	1
Deletion	Chr8	14496451	14496457	6
Deletion	Chr11	17717882	17718008	126
Deletion	Chr12	21826641	21826722	81
Deletion	Chr1	23149555	23149556	1
Deletion	Chr11	24861001	24883000	21999	2
Deletion	Chr6	25934197	25934201	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9055808	9204565	OsKitaake04g047200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes