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Mutant Information

Mutant Name	FN691-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN691-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6600764 C-T Hetero INTRON
SBS Chr1 26369889 C-G Hetero INTERGENIC
SBS Chr1 33623392 A-G Hetero INTERGENIC
SBS Chr1 38576886 G-T Hetero INTERGENIC
SBS Chr2 11858427 G-A Homo INTERGENIC
SBS Chr2 26914985 G-A Hetero INTERGENIC
SBS Chr2 31096748 T-A Hetero INTERGENIC
SBS Chr2 31401151 C-T Hetero INTERGENIC
SBS Chr3 1592953 T-C Hetero INTRON
SBS Chr4 1434699 T-C Hetero INTERGENIC
SBS Chr4 9866337 A-C Hetero INTERGENIC
SBS Chr4 35181160 T-A Homo INTERGENIC
SBS Chr4 35181161 T-A Homo INTERGENIC
SBS Chr5 4643467 T-A Homo INTERGENIC
SBS Chr5 14093673 A-G Homo INTERGENIC
SBS Chr6 9941346 G-A Hetero INTERGENIC
SBS Chr6 20232300 C-T Homo INTERGENIC
SBS Chr7 986625 C-T Hetero INTERGENIC
SBS Chr7 27535400 A-T Homo INTERGENIC
SBS Chr8 3243777 A-G Homo INTERGENIC
SBS Chr8 3324421 C-T Hetero INTERGENIC
SBS Chr8 26606174 C-G Hetero INTERGENIC
SBS Chr8 28650180 C-T Hetero INTERGENIC
SBS Chr9 16150175 G-T Hetero UTR_3_PRIME
SBS Chr9 16150176 T-A Hetero UTR_3_PRIME
SBS Chr9 16402359 T-A Hetero INTERGENIC
SBS Chr10 10671971 A-T Hetero INTERGENIC
SBS Chr10 11049831 T-G Hetero INTERGENIC
SBS Chr10 22917883 T-A Hetero INTRON
SBS Chr12 25385799 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g207900

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 574903 574904 1
Deletion Chr8 1828267 1828273 6
Deletion Chr5 7974833 7974845 12
Deletion Chr10 8468635 8468641 6
Deletion Chr3 9237596 9237597 1
Deletion Chr11 11584001 11617000 32999
Deletion Chr12 12639421 12639422 1
Deletion Chr1 13785106 13785111 5
Deletion Chr7 15418934 15418937 3
Deletion Chr7 16112714 16112716 2
Deletion Chr2 21142330 21142347 17
Deletion Chr7 25414001 25432000 17999 OsKitaake07g230700
Deletion Chr12 26442563 26442570 7
Deletion Chr2 34774389 34774398 9

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 10352596 10352599 2
Insertion Chr3 28060420 28060423 2
Insertion Chr7 21820916 21820919 2
Insertion Chr11 14625648 14625651 2
Insertion Chr11 16338087 16338090 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 10898186 11652610
Inversion Chr8 10898193 11652623

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6600764	C-T	Hetero	INTRON
SBS	Chr1	26369889	C-G	Hetero	INTERGENIC
SBS	Chr1	33623392	A-G	Hetero	INTERGENIC
SBS	Chr1	38576886	G-T	Hetero	INTERGENIC
SBS	Chr2	11858427	G-A	Homo	INTERGENIC
SBS	Chr2	26914985	G-A	Hetero	INTERGENIC
SBS	Chr2	31096748	T-A	Hetero	INTERGENIC
SBS	Chr2	31401151	C-T	Hetero	INTERGENIC
SBS	Chr3	1592953	T-C	Hetero	INTRON
SBS	Chr4	1434699	T-C	Hetero	INTERGENIC
SBS	Chr4	9866337	A-C	Hetero	INTERGENIC
SBS	Chr4	35181160	T-A	Homo	INTERGENIC
SBS	Chr4	35181161	T-A	Homo	INTERGENIC
SBS	Chr5	4643467	T-A	Homo	INTERGENIC
SBS	Chr5	14093673	A-G	Homo	INTERGENIC
SBS	Chr6	9941346	G-A	Hetero	INTERGENIC
SBS	Chr6	20232300	C-T	Homo	INTERGENIC
SBS	Chr7	986625	C-T	Hetero	INTERGENIC
SBS	Chr7	27535400	A-T	Homo	INTERGENIC
SBS	Chr8	3243777	A-G	Homo	INTERGENIC
SBS	Chr8	3324421	C-T	Hetero	INTERGENIC
SBS	Chr8	26606174	C-G	Hetero	INTERGENIC
SBS	Chr8	28650180	C-T	Hetero	INTERGENIC
SBS	Chr9	16150175	G-T	Hetero	UTR_3_PRIME
SBS	Chr9	16150176	T-A	Hetero	UTR_3_PRIME
SBS	Chr9	16402359	T-A	Hetero	INTERGENIC
SBS	Chr10	10671971	A-T	Hetero	INTERGENIC
SBS	Chr10	11049831	T-G	Hetero	INTERGENIC
SBS	Chr10	22917883	T-A	Hetero	INTRON
SBS	Chr12	25385799	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g207900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	574903	574904	1
Deletion	Chr8	1828267	1828273	6
Deletion	Chr5	7974833	7974845	12
Deletion	Chr10	8468635	8468641	6
Deletion	Chr3	9237596	9237597	1
Deletion	Chr11	11584001	11617000	32999
Deletion	Chr12	12639421	12639422	1
Deletion	Chr1	13785106	13785111	5
Deletion	Chr7	15418934	15418937	3
Deletion	Chr7	16112714	16112716	2
Deletion	Chr2	21142330	21142347	17
Deletion	Chr7	25414001	25432000	17999	OsKitaake07g230700
Deletion	Chr12	26442563	26442570	7
Deletion	Chr2	34774389	34774398	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	10898186	11652610
Inversion	Chr8	10898193	11652623

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes