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Mutant Information

Mutant Name	FN692-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN692-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15211484 G-T Hetero INTERGENIC
SBS Chr1 18198338 G-T Hetero INTERGENIC
SBS Chr1 20675625 C-T Hetero UTR_3_PRIME
SBS Chr1 24329745 G-C Hetero INTRON
SBS Chr1 25632441 C-G Hetero INTERGENIC
SBS Chr1 26404492 A-T Hetero INTERGENIC
SBS Chr2 211904 A-T Homo INTRON
SBS Chr2 2846156 C-T Hetero INTERGENIC
SBS Chr2 3671755 C-T Hetero INTERGENIC
SBS Chr2 26644910 C-T Homo UTR_5_PRIME
SBS Chr2 33994056 C-T Homo INTERGENIC
SBS Chr3 2886608 G-A Homo INTERGENIC
SBS Chr3 3185596 G-A Homo INTERGENIC
SBS Chr3 17406279 T-C Homo INTERGENIC
SBS Chr3 18045666 G-T Homo INTERGENIC
SBS Chr4 11642268 A-T Homo INTERGENIC
SBS Chr5 10684844 C-G Hetero INTERGENIC
SBS Chr5 14041648 G-A Hetero INTERGENIC
SBS Chr5 17598735 G-A Hetero INTERGENIC
SBS Chr5 19936665 G-A Homo INTERGENIC
SBS Chr5 20597134 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g164200
SBS Chr6 16565062 A-T Hetero INTERGENIC
SBS Chr7 3580816 C-A Homo INTRON
SBS Chr7 6154415 G-C Homo INTERGENIC
SBS Chr7 12763121 T-A Homo INTERGENIC
SBS Chr8 9150401 G-A Homo INTRON
SBS Chr8 9150402 T-A Homo INTRON
SBS Chr8 11892781 G-A Hetero INTERGENIC
SBS Chr8 18309081 G-T Hetero INTERGENIC
SBS Chr8 19969997 C-A Hetero INTERGENIC
SBS Chr9 3528301 C-T Hetero INTERGENIC
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr10 1359301 G-A Hetero INTERGENIC
SBS Chr10 19384701 C-T Homo INTERGENIC
SBS Chr10 19384702 A-T Homo INTERGENIC
SBS Chr11 27580 T-C Homo INTRON
SBS Chr11 4855992 A-T Hetero INTERGENIC
SBS Chr11 11796137 G-A Homo INTERGENIC
SBS Chr11 23449067 G-A Hetero INTRON
SBS Chr12 9860332 G-T Homo INTERGENIC
SBS Chr12 12160410 G-A Hetero INTERGENIC
SBS Chr12 12160411 G-A Hetero INTERGENIC
SBS Chr12 12582942 G-A Hetero INTERGENIC
SBS Chr12 25482728 A-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3971987 3971989 2
Deletion Chr5 5731615 5731616 1
Deletion Chr5 6698001 6733000 34999 5
Deletion Chr5 14188669 14188671 2
Deletion Chr5 15418922 15418930 8
Deletion Chr3 17639215 17639216 1
Deletion Chr2 20160809 20160812 3
Deletion Chr12 20473347 20473357 10

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16616671 16616674 2
Insertion Chr4 34711299 34711302 2
Insertion Chr5 21775365 21775368 2
Insertion Chr6 22816774 22816777 2
Insertion Chr6 24598872 24598875 2
Insertion Chr8 4831893 4831897 3
Insertion Chr9 15121259 15121262 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 17578108 17606123 OsKitaake01g179600
Inversion Chr1 17578689 17606127 OsKitaake01g179600

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 140243 Chr1 17578672 2
Translocation Chr8 140256 Chr1 530431 2
Translocation Chr7 12858762 Chr6 21382113 2
Translocation Chr7 12858766 Chr6 21382356 2
Translocation Chr5 23003856 Chr1 573328
Translocation Chr5 23003870 Chr1 573094 OsKitaake01g114600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15211484	G-T	Hetero	INTERGENIC
SBS	Chr1	18198338	G-T	Hetero	INTERGENIC
SBS	Chr1	20675625	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	24329745	G-C	Hetero	INTRON
SBS	Chr1	25632441	C-G	Hetero	INTERGENIC
SBS	Chr1	26404492	A-T	Hetero	INTERGENIC
SBS	Chr2	211904	A-T	Homo	INTRON
SBS	Chr2	2846156	C-T	Hetero	INTERGENIC
SBS	Chr2	3671755	C-T	Hetero	INTERGENIC
SBS	Chr2	26644910	C-T	Homo	UTR_5_PRIME
SBS	Chr2	33994056	C-T	Homo	INTERGENIC
SBS	Chr3	2886608	G-A	Homo	INTERGENIC
SBS	Chr3	3185596	G-A	Homo	INTERGENIC
SBS	Chr3	17406279	T-C	Homo	INTERGENIC
SBS	Chr3	18045666	G-T	Homo	INTERGENIC
SBS	Chr4	11642268	A-T	Homo	INTERGENIC
SBS	Chr5	10684844	C-G	Hetero	INTERGENIC
SBS	Chr5	14041648	G-A	Hetero	INTERGENIC
SBS	Chr5	17598735	G-A	Hetero	INTERGENIC
SBS	Chr5	19936665	G-A	Homo	INTERGENIC
SBS	Chr5	20597134	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g164200
SBS	Chr6	16565062	A-T	Hetero	INTERGENIC
SBS	Chr7	3580816	C-A	Homo	INTRON
SBS	Chr7	6154415	G-C	Homo	INTERGENIC
SBS	Chr7	12763121	T-A	Homo	INTERGENIC
SBS	Chr8	9150401	G-A	Homo	INTRON
SBS	Chr8	9150402	T-A	Homo	INTRON
SBS	Chr8	11892781	G-A	Hetero	INTERGENIC
SBS	Chr8	18309081	G-T	Hetero	INTERGENIC
SBS	Chr8	19969997	C-A	Hetero	INTERGENIC
SBS	Chr9	3528301	C-T	Hetero	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr10	1359301	G-A	Hetero	INTERGENIC
SBS	Chr10	19384701	C-T	Homo	INTERGENIC
SBS	Chr10	19384702	A-T	Homo	INTERGENIC
SBS	Chr11	27580	T-C	Homo	INTRON
SBS	Chr11	4855992	A-T	Hetero	INTERGENIC
SBS	Chr11	11796137	G-A	Homo	INTERGENIC
SBS	Chr11	23449067	G-A	Hetero	INTRON
SBS	Chr12	9860332	G-T	Homo	INTERGENIC
SBS	Chr12	12160410	G-A	Hetero	INTERGENIC
SBS	Chr12	12160411	G-A	Hetero	INTERGENIC
SBS	Chr12	12582942	G-A	Hetero	INTERGENIC
SBS	Chr12	25482728	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3971987	3971989	2
Deletion	Chr5	5731615	5731616	1
Deletion	Chr5	6698001	6733000	34999	5
Deletion	Chr5	14188669	14188671	2
Deletion	Chr5	15418922	15418930	8
Deletion	Chr3	17639215	17639216	1
Deletion	Chr2	20160809	20160812	3
Deletion	Chr12	20473347	20473357	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	17578108	17606123	OsKitaake01g179600
Inversion	Chr1	17578689	17606127	OsKitaake01g179600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes