Search Kitaake

Mutant Information

Mutant Name	FN695-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN695-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4075745 G-A Hetero INTERGENIC
SBS Chr1 11352699 A-T Hetero INTERGENIC
SBS Chr1 21340010 C-T Homo INTERGENIC
SBS Chr1 29608951 G-A Homo INTERGENIC
SBS Chr2 9361354 G-T Homo INTERGENIC
SBS Chr2 10319138 G-T Hetero INTERGENIC
SBS Chr2 21513557 T-A Homo INTERGENIC
SBS Chr3 20522920 G-A Homo INTERGENIC
SBS Chr3 22219954 C-T Homo INTERGENIC
SBS Chr5 6522508 G-T Homo NON_SYNONYMOUS_CODING OsKitaake05g066200
SBS Chr5 14337678 C-T Hetero INTERGENIC
SBS Chr5 23646294 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g206800
SBS Chr5 24520504 G-A Hetero INTERGENIC
SBS Chr5 29610514 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 11006476 C-T Hetero INTERGENIC
SBS Chr6 22099149 A-G Hetero INTERGENIC
SBS Chr6 22757006 G-C Hetero INTERGENIC
SBS Chr6 29545940 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g274600
SBS Chr6 30680674 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g289600
SBS Chr7 1482302 A-G Hetero INTERGENIC
SBS Chr8 7177400 C-T Hetero INTERGENIC
SBS Chr8 7746178 G-A Hetero INTERGENIC
SBS Chr8 7746179 C-T Hetero INTERGENIC
SBS Chr8 9774328 A-T Hetero INTERGENIC
SBS Chr8 12419591 G-A Hetero INTERGENIC
SBS Chr8 25093284 T-A Hetero INTERGENIC
SBS Chr8 25093286 G-A Hetero INTERGENIC
SBS Chr8 28334827 C-T Hetero INTRON
SBS Chr10 7434648 A-C Hetero INTERGENIC
SBS Chr11 5347308 C-A Homo INTERGENIC
SBS Chr11 6983848 T-C Homo INTERGENIC
SBS Chr12 10114622 C-T Homo INTERGENIC
SBS Chr12 10114623 T-A Homo INTERGENIC
SBS Chr12 18368686 G-A Hetero INTERGENIC
SBS Chr12 27053627 G-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 9193842 9193848 6
Deletion Chr10 10338590 10338712 122
Deletion Chr12 11360692 11360693 1
Deletion Chr4 13171382 13171383 1
Deletion Chr1 14002458 14002459 1
Deletion Chr7 14309622 14309623 1
Deletion Chr4 17284106 17284108 2
Deletion Chr10 17886057 17886059 2 OsKitaake10g124700
Deletion Chr6 19179665 19179672 7
Deletion Chr2 19249866 19249868 2
Deletion Chr3 30199623 30199629 6
Deletion Chr4 35500452 35500459 7 OsKitaake04g301900

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 4140482 4140485 2
Insertion Chr6 4897786 4897789 2
Insertion Chr7 7069809 7069815 5
Insertion Chr9 10911913 10911916 2
Insertion Chr12 25745688 25745692 3

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 14813004 14985529
Inversion Chr1 14985537 15237421 OsKitaake01g144750
Inversion Chr2 23917224 24453850 OsKitaake02g234700
Inversion Chr2 23917767 24453853 OsKitaake02g234700
Inversion Chr12 24532263 24594346
Inversion Chr12 24532340 24594363

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4075745	G-A	Hetero	INTERGENIC
SBS	Chr1	11352699	A-T	Hetero	INTERGENIC
SBS	Chr1	21340010	C-T	Homo	INTERGENIC
SBS	Chr1	29608951	G-A	Homo	INTERGENIC
SBS	Chr2	9361354	G-T	Homo	INTERGENIC
SBS	Chr2	10319138	G-T	Hetero	INTERGENIC
SBS	Chr2	21513557	T-A	Homo	INTERGENIC
SBS	Chr3	20522920	G-A	Homo	INTERGENIC
SBS	Chr3	22219954	C-T	Homo	INTERGENIC
SBS	Chr5	6522508	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g066200
SBS	Chr5	14337678	C-T	Hetero	INTERGENIC
SBS	Chr5	23646294	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g206800
SBS	Chr5	24520504	G-A	Hetero	INTERGENIC
SBS	Chr5	29610514	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	11006476	C-T	Hetero	INTERGENIC
SBS	Chr6	22099149	A-G	Hetero	INTERGENIC
SBS	Chr6	22757006	G-C	Hetero	INTERGENIC
SBS	Chr6	29545940	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g274600
SBS	Chr6	30680674	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g289600
SBS	Chr7	1482302	A-G	Hetero	INTERGENIC
SBS	Chr8	7177400	C-T	Hetero	INTERGENIC
SBS	Chr8	7746178	G-A	Hetero	INTERGENIC
SBS	Chr8	7746179	C-T	Hetero	INTERGENIC
SBS	Chr8	9774328	A-T	Hetero	INTERGENIC
SBS	Chr8	12419591	G-A	Hetero	INTERGENIC
SBS	Chr8	25093284	T-A	Hetero	INTERGENIC
SBS	Chr8	25093286	G-A	Hetero	INTERGENIC
SBS	Chr8	28334827	C-T	Hetero	INTRON
SBS	Chr10	7434648	A-C	Hetero	INTERGENIC
SBS	Chr11	5347308	C-A	Homo	INTERGENIC
SBS	Chr11	6983848	T-C	Homo	INTERGENIC
SBS	Chr12	10114622	C-T	Homo	INTERGENIC
SBS	Chr12	10114623	T-A	Homo	INTERGENIC
SBS	Chr12	18368686	G-A	Hetero	INTERGENIC
SBS	Chr12	27053627	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	9193842	9193848	6
Deletion	Chr10	10338590	10338712	122
Deletion	Chr12	11360692	11360693	1
Deletion	Chr4	13171382	13171383	1
Deletion	Chr1	14002458	14002459	1
Deletion	Chr7	14309622	14309623	1
Deletion	Chr4	17284106	17284108	2
Deletion	Chr10	17886057	17886059	2	OsKitaake10g124700
Deletion	Chr6	19179665	19179672	7
Deletion	Chr2	19249866	19249868	2
Deletion	Chr3	30199623	30199629	6
Deletion	Chr4	35500452	35500459	7	OsKitaake04g301900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	14813004	14985529
Inversion	Chr1	14985537	15237421	OsKitaake01g144750
Inversion	Chr2	23917224	24453850	OsKitaake02g234700
Inversion	Chr2	23917767	24453853	OsKitaake02g234700
Inversion	Chr12	24532263	24594346
Inversion	Chr12	24532340	24594363

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes