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| Mutant Information |
|---|
| Mutant Name | FN696-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN696-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20050572 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 23317495 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 25774335 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 27619286 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 29686944 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 10280343 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 1928613 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g027600 |
| SBS | Chr3 | 12062988 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 20057359 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 1314042 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 11219984 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 11317341 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 22680239 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 26945085 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 8181080 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14577296 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 16524757 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 20421967 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 10123780 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 19836266 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 22981781 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 7893093 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 13477843 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 16111355 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18625661 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7445800 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8365370 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 14674067 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 6934132 | A-T | Hetero | INTRON |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 2651019 | 2651032 | 13 | |
| Deletion | Chr7 | 2703140 | 2703141 | 1 | OsKitaake07g035000 |
| Deletion | Chr3 | 9957278 | 9957280 | 2 | |
| Deletion | Chr1 | 10116955 | 10116956 | 1 | |
| Deletion | Chr2 | 14219452 | 14219455 | 3 | |
| Deletion | Chr8 | 23715293 | 23715295 | 2 | |
| Deletion | Chr6 | 23920093 | 23920095 | 2 |
Insertions: 5
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 3487898 | 3843816 | |
| Inversion | Chr6 | 23815729 | 23866975 | OsKitaake06g210800 |
| Inversion | Chr6 | 23815731 | 23866979 | OsKitaake06g210800 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 21078808 | Chr3 | 33416721 | |
| Translocation | Chr9 | 21078817 | Chr3 | 33414909 | |
| Translocation | Chr6 | 23866948 | Chr3 | 33416839 | OsKitaake06g210800 |