Search Kitaake

Mutant Information

Mutant Name	FN697-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN697-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 17

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21536619 C-T Homo INTERGENIC
SBS Chr1 26510565 A-C Homo INTERGENIC
SBS Chr2 14325717 T-G Hetero INTERGENIC
SBS Chr2 32431734 G-A Hetero INTERGENIC
SBS Chr3 15895142 T-C Hetero INTRON
SBS Chr4 1408838 G-T Hetero INTERGENIC
SBS Chr4 15833622 G-T Hetero INTERGENIC
SBS Chr5 22590163 A-G Hetero INTRON
SBS Chr5 24239110 A-G Hetero INTRON
SBS Chr6 30735248 G-T Hetero INTERGENIC
SBS Chr7 141153 A-T Hetero INTERGENIC
SBS Chr8 18699758 G-A Hetero INTERGENIC
SBS Chr9 2172565 A-G Homo INTERGENIC
SBS Chr10 4393471 G-A Homo INTERGENIC
SBS Chr11 14074023 T-A Hetero INTERGENIC
SBS Chr12 5837711 T-G Homo INTERGENIC
SBS Chr12 8137010 G-A Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 728429 728496 67
Deletion Chr11 1264361 1264363 2 OsKitaake11g015300
Deletion Chr5 8908306 8908319 13
Deletion Chr5 11974861 11974863 2
Deletion Chr11 14425209 14425522 313
Deletion Chr9 17885776 17885778 2
Deletion Chr12 19842604 19842609 5
Deletion Chr11 20772521 20772525 4
Deletion Chr1 22814825 22814829 4
Deletion Chr1 30163390 30163402 12

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 33232947 33232950 2
Insertion Chr10 23539482 23539487 4

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 9567017 Chr4 22980667
Translocation Chr6 9568420 Chr4 22980678

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21536619	C-T	Homo	INTERGENIC
SBS	Chr1	26510565	A-C	Homo	INTERGENIC
SBS	Chr2	14325717	T-G	Hetero	INTERGENIC
SBS	Chr2	32431734	G-A	Hetero	INTERGENIC
SBS	Chr3	15895142	T-C	Hetero	INTRON
SBS	Chr4	1408838	G-T	Hetero	INTERGENIC
SBS	Chr4	15833622	G-T	Hetero	INTERGENIC
SBS	Chr5	22590163	A-G	Hetero	INTRON
SBS	Chr5	24239110	A-G	Hetero	INTRON
SBS	Chr6	30735248	G-T	Hetero	INTERGENIC
SBS	Chr7	141153	A-T	Hetero	INTERGENIC
SBS	Chr8	18699758	G-A	Hetero	INTERGENIC
SBS	Chr9	2172565	A-G	Homo	INTERGENIC
SBS	Chr10	4393471	G-A	Homo	INTERGENIC
SBS	Chr11	14074023	T-A	Hetero	INTERGENIC
SBS	Chr12	5837711	T-G	Homo	INTERGENIC
SBS	Chr12	8137010	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	728429	728496	67
Deletion	Chr11	1264361	1264363	2	OsKitaake11g015300
Deletion	Chr5	8908306	8908319	13
Deletion	Chr5	11974861	11974863	2
Deletion	Chr11	14425209	14425522	313
Deletion	Chr9	17885776	17885778	2
Deletion	Chr12	19842604	19842609	5
Deletion	Chr11	20772521	20772525	4
Deletion	Chr1	22814825	22814829	4
Deletion	Chr1	30163390	30163402	12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	9567017	Chr4	22980667
Translocation	Chr6	9568420	Chr4	22980678

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes