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Mutant Information

Mutant Name	FN698-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN698-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12498763 G-T Hetero INTERGENIC
SBS Chr1 32044509 C-A Hetero INTERGENIC
SBS Chr2 2553073 C-A Hetero INTRON
SBS Chr2 21639355 A-T Homo INTERGENIC
SBS Chr3 3803845 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g053700
SBS Chr3 9051973 G-C Hetero INTERGENIC
SBS Chr4 1377706 G-A Hetero INTERGENIC
SBS Chr4 13659517 C-G Hetero INTERGENIC
SBS Chr4 32053082 C-A Hetero INTERGENIC
SBS Chr4 32053083 G-A Hetero INTERGENIC
SBS Chr4 32628391 T-G Hetero UTR_5_PRIME
SBS Chr4 32628392 C-A Hetero UTR_5_PRIME
SBS Chr5 8832557 C-A Hetero INTRON
SBS Chr5 15360191 C-T Homo INTERGENIC
SBS Chr5 22578358 G-A Hetero INTERGENIC
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr6 30989959 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g293900
SBS Chr7 14957276 C-A Hetero INTERGENIC
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr7 26045776 C-T Hetero INTERGENIC
SBS Chr7 27582792 G-A Homo SYNONYMOUS_STOP
SBS Chr8 26693202 A-T Hetero INTERGENIC
SBS Chr9 11322251 G-A Hetero INTERGENIC
SBS Chr9 19595848 G-A Hetero INTERGENIC
SBS Chr10 8404277 C-A Homo INTERGENIC
SBS Chr11 1329861 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g016400
SBS Chr11 3538162 C-T Homo INTERGENIC
SBS Chr11 27373918 C-T Hetero INTERGENIC
SBS Chr12 7195128 T-C Hetero INTERGENIC
SBS Chr12 10346867 G-A Hetero INTRON
SBS Chr12 14753547 G-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 571839 571844 5 OsKitaake03g009200
Deletion Chr8 2054292 2054295 3
Deletion Chr5 5919059 5919070 11
Deletion Chr1 10112610 10112613 3
Deletion Chr7 12340679 12340680 1
Deletion Chr12 14229930 14229947 17
Deletion Chr11 15726943 15726946 3
Deletion Chr6 22695799 22695801 2
Deletion Chr11 23892405 23892409 4
Deletion Chr5 28207945 28207946 1
Deletion Chr2 29670107 29670110 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 1745147 1745150 2
Insertion Chr7 21603745 21603749 3
Insertion Chr9 22129302 22129305 2
Insertion Chr12 22995057 22995060 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 21051320 21147532
Inversion Chr9 21939274 22373139
Inversion Chr9 21939290 22373143
Inversion Chr4 26402060 26459100 2
Inversion Chr4 26416062 26459099 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2468395 Chr7 5718173 OsKitaake11g035700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12498763	G-T	Hetero	INTERGENIC
SBS	Chr1	32044509	C-A	Hetero	INTERGENIC
SBS	Chr2	2553073	C-A	Hetero	INTRON
SBS	Chr2	21639355	A-T	Homo	INTERGENIC
SBS	Chr3	3803845	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g053700
SBS	Chr3	9051973	G-C	Hetero	INTERGENIC
SBS	Chr4	1377706	G-A	Hetero	INTERGENIC
SBS	Chr4	13659517	C-G	Hetero	INTERGENIC
SBS	Chr4	32053082	C-A	Hetero	INTERGENIC
SBS	Chr4	32053083	G-A	Hetero	INTERGENIC
SBS	Chr4	32628391	T-G	Hetero	UTR_5_PRIME
SBS	Chr4	32628392	C-A	Hetero	UTR_5_PRIME
SBS	Chr5	8832557	C-A	Hetero	INTRON
SBS	Chr5	15360191	C-T	Homo	INTERGENIC
SBS	Chr5	22578358	G-A	Hetero	INTERGENIC
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr6	30989959	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g293900
SBS	Chr7	14957276	C-A	Hetero	INTERGENIC
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr7	26045776	C-T	Hetero	INTERGENIC
SBS	Chr7	27582792	G-A	Homo	SYNONYMOUS_STOP
SBS	Chr8	26693202	A-T	Hetero	INTERGENIC
SBS	Chr9	11322251	G-A	Hetero	INTERGENIC
SBS	Chr9	19595848	G-A	Hetero	INTERGENIC
SBS	Chr10	8404277	C-A	Homo	INTERGENIC
SBS	Chr11	1329861	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g016400
SBS	Chr11	3538162	C-T	Homo	INTERGENIC
SBS	Chr11	27373918	C-T	Hetero	INTERGENIC
SBS	Chr12	7195128	T-C	Hetero	INTERGENIC
SBS	Chr12	10346867	G-A	Hetero	INTRON
SBS	Chr12	14753547	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	571839	571844	5	OsKitaake03g009200
Deletion	Chr8	2054292	2054295	3
Deletion	Chr5	5919059	5919070	11
Deletion	Chr1	10112610	10112613	3
Deletion	Chr7	12340679	12340680	1
Deletion	Chr12	14229930	14229947	17
Deletion	Chr11	15726943	15726946	3
Deletion	Chr6	22695799	22695801	2
Deletion	Chr11	23892405	23892409	4
Deletion	Chr5	28207945	28207946	1
Deletion	Chr2	29670107	29670110	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	21051320	21147532
Inversion	Chr9	21939274	22373139
Inversion	Chr9	21939290	22373143
Inversion	Chr4	26402060	26459100	2
Inversion	Chr4	26416062	26459099	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes