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Mutant Information

Mutant Name	FN701-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN701-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6975358 G-A Homo INTERGENIC
SBS Chr1 10906085 A-G Hetero INTERGENIC
SBS Chr1 41715636 T-C Hetero INTERGENIC
SBS Chr2 2415455 G-T Homo INTRON
SBS Chr2 3800139 C-G Homo NON_SYNONYMOUS_CODING OsKitaake02g055050
SBS Chr2 12923777 T-C Hetero INTERGENIC
SBS Chr2 15305928 G-T Hetero INTERGENIC
SBS Chr2 16427496 A-C Hetero INTERGENIC
SBS Chr2 27086341 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 33144368 G-A Homo INTERGENIC
SBS Chr3 1052011 G-C Hetero UTR_3_PRIME
SBS Chr3 3036330 C-T Hetero INTRON
SBS Chr3 5444566 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 18348188 G-A Hetero INTERGENIC
SBS Chr3 34160935 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g369300
SBS Chr3 35571933 T-C Homo INTRON
SBS Chr4 8448951 C-T Hetero INTERGENIC
SBS Chr4 16625224 G-A Hetero INTERGENIC
SBS Chr5 12256855 C-A Hetero INTERGENIC
SBS Chr5 15123665 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g115700
SBS Chr5 24707552 G-A Hetero INTERGENIC
SBS Chr6 26313417 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g235900
SBS Chr8 4133240 G-T Homo INTRON
SBS Chr8 10708599 G-A Homo INTERGENIC
SBS Chr8 13436631 T-G Hetero INTERGENIC
SBS Chr8 19766526 G-A Homo INTRON
SBS Chr8 27382474 T-A Hetero INTRON
SBS Chr9 4170545 A-T Homo INTERGENIC
SBS Chr9 4170546 A-T Homo INTERGENIC
SBS Chr9 4170548 A-T Homo INTERGENIC
SBS Chr9 8616941 T-A Homo INTERGENIC
SBS Chr9 8616942 C-A Homo INTERGENIC
SBS Chr10 16420382 C-T Hetero INTERGENIC
SBS Chr10 21792311 G-T Hetero INTERGENIC
SBS Chr11 499684 A-G Homo INTERGENIC
SBS Chr11 22749227 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g180400
SBS Chr11 23149074 C-T Hetero INTERGENIC
SBS Chr11 25792871 T-A Hetero INTERGENIC
SBS Chr12 6918120 C-T Homo INTERGENIC
SBS Chr12 15727044 G-A Homo INTERGENIC
SBS Chr12 26494625 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 337001 367000 29999 5
Deletion Chr3 1871001 1959000 87999 15
Deletion Chr9 4345769 4345779 10
Deletion Chr2 5813126 5813128 2
Deletion Chr7 11676411 11676415 4
Deletion Chr7 11740755 11740758 3
Deletion Chr5 21775365 21775367 2
Deletion Chr9 22586659 22586660 1
Deletion Chr6 24216548 24216552 4
Deletion Chr7 26567874 26567879 5
Deletion Chr1 38734287 38734289 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 2089297 2089301 3
Insertion Chr4 36157070 36157072 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6975358	G-A	Homo	INTERGENIC
SBS	Chr1	10906085	A-G	Hetero	INTERGENIC
SBS	Chr1	41715636	T-C	Hetero	INTERGENIC
SBS	Chr2	2415455	G-T	Homo	INTRON
SBS	Chr2	3800139	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g055050
SBS	Chr2	12923777	T-C	Hetero	INTERGENIC
SBS	Chr2	15305928	G-T	Hetero	INTERGENIC
SBS	Chr2	16427496	A-C	Hetero	INTERGENIC
SBS	Chr2	27086341	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	33144368	G-A	Homo	INTERGENIC
SBS	Chr3	1052011	G-C	Hetero	UTR_3_PRIME
SBS	Chr3	3036330	C-T	Hetero	INTRON
SBS	Chr3	5444566	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	18348188	G-A	Hetero	INTERGENIC
SBS	Chr3	34160935	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g369300
SBS	Chr3	35571933	T-C	Homo	INTRON
SBS	Chr4	8448951	C-T	Hetero	INTERGENIC
SBS	Chr4	16625224	G-A	Hetero	INTERGENIC
SBS	Chr5	12256855	C-A	Hetero	INTERGENIC
SBS	Chr5	15123665	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g115700
SBS	Chr5	24707552	G-A	Hetero	INTERGENIC
SBS	Chr6	26313417	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g235900
SBS	Chr8	4133240	G-T	Homo	INTRON
SBS	Chr8	10708599	G-A	Homo	INTERGENIC
SBS	Chr8	13436631	T-G	Hetero	INTERGENIC
SBS	Chr8	19766526	G-A	Homo	INTRON
SBS	Chr8	27382474	T-A	Hetero	INTRON
SBS	Chr9	4170545	A-T	Homo	INTERGENIC
SBS	Chr9	4170546	A-T	Homo	INTERGENIC
SBS	Chr9	4170548	A-T	Homo	INTERGENIC
SBS	Chr9	8616941	T-A	Homo	INTERGENIC
SBS	Chr9	8616942	C-A	Homo	INTERGENIC
SBS	Chr10	16420382	C-T	Hetero	INTERGENIC
SBS	Chr10	21792311	G-T	Hetero	INTERGENIC
SBS	Chr11	499684	A-G	Homo	INTERGENIC
SBS	Chr11	22749227	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g180400
SBS	Chr11	23149074	C-T	Hetero	INTERGENIC
SBS	Chr11	25792871	T-A	Hetero	INTERGENIC
SBS	Chr12	6918120	C-T	Homo	INTERGENIC
SBS	Chr12	15727044	G-A	Homo	INTERGENIC
SBS	Chr12	26494625	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	337001	367000	29999	5
Deletion	Chr3	1871001	1959000	87999	15
Deletion	Chr9	4345769	4345779	10
Deletion	Chr2	5813126	5813128	2
Deletion	Chr7	11676411	11676415	4
Deletion	Chr7	11740755	11740758	3
Deletion	Chr5	21775365	21775367	2
Deletion	Chr9	22586659	22586660	1
Deletion	Chr6	24216548	24216552	4
Deletion	Chr7	26567874	26567879	5
Deletion	Chr1	38734287	38734289	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes