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Mutant Information

Mutant Name	FN702-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN702-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31302 G-C Hetero INTRON
SBS Chr1 1434964 C-A Homo INTERGENIC
SBS Chr1 11193522 C-A Hetero INTRON
SBS Chr1 36790660 A-T Homo INTERGENIC
SBS Chr2 4742888 T-C Homo INTRON
SBS Chr2 7920746 A-T Hetero INTERGENIC
SBS Chr2 24339465 G-A Homo INTERGENIC
SBS Chr2 26639278 A-G Hetero INTERGENIC
SBS Chr3 15046507 C-G Hetero INTERGENIC
SBS Chr4 5141106 A-G Homo UTR_5_PRIME
SBS Chr4 11145531 G-A Hetero INTERGENIC
SBS Chr5 4141807 A-T Hetero INTERGENIC
SBS Chr5 4160684 G-A Hetero INTERGENIC
SBS Chr5 12208052 C-A Hetero INTERGENIC
SBS Chr5 12387843 C-T Hetero INTERGENIC
SBS Chr5 19782047 C-T Hetero INTRON
SBS Chr6 2663243 C-T Homo INTERGENIC
SBS Chr6 15222578 C-T Hetero INTERGENIC
SBS Chr7 3287302 C-T Hetero INTERGENIC
SBS Chr7 3975149 G-A Hetero INTERGENIC
SBS Chr7 8011949 C-T Hetero INTERGENIC
SBS Chr7 13182442 C-A Hetero INTERGENIC
SBS Chr7 16372000 G-A Hetero INTERGENIC
SBS Chr7 29279412 T-A Hetero INTRON
SBS Chr8 1213765 C-A Homo NON_SYNONYMOUS_CODING OsKitaake08g016000
SBS Chr8 2033729 C-T Homo INTERGENIC
SBS Chr8 25423340 C-A Hetero INTRON
SBS Chr8 26004507 G-A Hetero INTERGENIC
SBS Chr8 27949969 G-A Hetero INTERGENIC
SBS Chr9 4857819 G-C Hetero INTERGENIC
SBS Chr9 5484543 G-A Homo INTERGENIC
SBS Chr9 11659468 T-A Homo INTRON
SBS Chr11 23163896 A-T Homo INTERGENIC
SBS Chr12 1981510 C-T Homo INTERGENIC
SBS Chr12 7977502 C-T Hetero INTERGENIC
SBS Chr12 14618033 G-A Hetero INTERGENIC
SBS Chr12 22476135 C-T Homo INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 4328562 4328575 13
Deletion Chr7 4641001 4712000 70999 13
Deletion Chr11 5532166 5532210 44
Deletion Chr3 7110908 7110910 2
Deletion Chr10 7672006 7672008 2
Deletion Chr5 9257339 9257340 1
Deletion Chr12 9611428 9611429 1
Deletion Chr8 13924848 13924849 1
Deletion Chr10 16240633 16240634 1
Deletion Chr9 21774165 21774175 10
Deletion Chr4 28142550 28142553 3
Deletion Chr3 36547535 36547536 1 OsKitaake03g406500

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 34865050 34865052 1
Insertion Chr3 16285087 16285090 2
Insertion Chr4 22525662 22525665 2
Insertion Chr6 26228257 26228260 2
Insertion Chr4 22525662 22525665 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 3277311 4191362
Inversion Chr7 3309841 4193030
Inversion Chr9 11403179 11681148 OsKitaake09g070700
Inversion Chr3 19435678 19934675
Inversion Chr3 19435695 19910263

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 3277325 Chr4 23318099
Translocation Chr7 4712053 Chr3 7952900 OsKitaake03g110100
Translocation Chr7 4712120 Chr3 7952898 OsKitaake03g110100
Translocation Chr7 4712125 Chr4 23320127 OsKitaake04g143100
Translocation Chr6 22438625 Chr2 4325875 2
Translocation Chr6 22450839 Chr2 4325860 OsKitaake02g060600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31302	G-C	Hetero	INTRON
SBS	Chr1	1434964	C-A	Homo	INTERGENIC
SBS	Chr1	11193522	C-A	Hetero	INTRON
SBS	Chr1	36790660	A-T	Homo	INTERGENIC
SBS	Chr2	4742888	T-C	Homo	INTRON
SBS	Chr2	7920746	A-T	Hetero	INTERGENIC
SBS	Chr2	24339465	G-A	Homo	INTERGENIC
SBS	Chr2	26639278	A-G	Hetero	INTERGENIC
SBS	Chr3	15046507	C-G	Hetero	INTERGENIC
SBS	Chr4	5141106	A-G	Homo	UTR_5_PRIME
SBS	Chr4	11145531	G-A	Hetero	INTERGENIC
SBS	Chr5	4141807	A-T	Hetero	INTERGENIC
SBS	Chr5	4160684	G-A	Hetero	INTERGENIC
SBS	Chr5	12208052	C-A	Hetero	INTERGENIC
SBS	Chr5	12387843	C-T	Hetero	INTERGENIC
SBS	Chr5	19782047	C-T	Hetero	INTRON
SBS	Chr6	2663243	C-T	Homo	INTERGENIC
SBS	Chr6	15222578	C-T	Hetero	INTERGENIC
SBS	Chr7	3287302	C-T	Hetero	INTERGENIC
SBS	Chr7	3975149	G-A	Hetero	INTERGENIC
SBS	Chr7	8011949	C-T	Hetero	INTERGENIC
SBS	Chr7	13182442	C-A	Hetero	INTERGENIC
SBS	Chr7	16372000	G-A	Hetero	INTERGENIC
SBS	Chr7	29279412	T-A	Hetero	INTRON
SBS	Chr8	1213765	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g016000
SBS	Chr8	2033729	C-T	Homo	INTERGENIC
SBS	Chr8	25423340	C-A	Hetero	INTRON
SBS	Chr8	26004507	G-A	Hetero	INTERGENIC
SBS	Chr8	27949969	G-A	Hetero	INTERGENIC
SBS	Chr9	4857819	G-C	Hetero	INTERGENIC
SBS	Chr9	5484543	G-A	Homo	INTERGENIC
SBS	Chr9	11659468	T-A	Homo	INTRON
SBS	Chr11	23163896	A-T	Homo	INTERGENIC
SBS	Chr12	1981510	C-T	Homo	INTERGENIC
SBS	Chr12	7977502	C-T	Hetero	INTERGENIC
SBS	Chr12	14618033	G-A	Hetero	INTERGENIC
SBS	Chr12	22476135	C-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	4328562	4328575	13
Deletion	Chr7	4641001	4712000	70999	13
Deletion	Chr11	5532166	5532210	44
Deletion	Chr3	7110908	7110910	2
Deletion	Chr10	7672006	7672008	2
Deletion	Chr5	9257339	9257340	1
Deletion	Chr12	9611428	9611429	1
Deletion	Chr8	13924848	13924849	1
Deletion	Chr10	16240633	16240634	1
Deletion	Chr9	21774165	21774175	10
Deletion	Chr4	28142550	28142553	3
Deletion	Chr3	36547535	36547536	1	OsKitaake03g406500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3277311	4191362
Inversion	Chr7	3309841	4193030
Inversion	Chr9	11403179	11681148	OsKitaake09g070700
Inversion	Chr3	19435678	19934675
Inversion	Chr3	19435695	19910263

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes