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| Mutant Information |
|---|
| Mutant Name | FN703-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN703-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 24866544 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 34227263 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34801648 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 34801649 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 5152152 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 7442685 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 10685997 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 13603831 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 4950122 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15494553 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5115457 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 35434816 | A-T | Homo | INTRON | |
| SBS | Chr5 | 9947419 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 20868014 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 4169793 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 11035768 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 21650338 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 10820042 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 25554973 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 25554974 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g201700 |
| SBS | Chr9 | 10617007 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 21985777 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12625650 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12625652 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12625664 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14402449 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 4638524 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 12307821 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23469741 | C-T | Hetero | SYNONYMOUS_CODING |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 890758 | 890761 | 3 | |
| Deletion | Chr10 | 3056212 | 3056217 | 5 | |
| Deletion | Chr9 | 3535719 | 3535723 | 4 | OsKitaake09g018200 |
| Deletion | Chr1 | 4098727 | 4098728 | 1 | |
| Deletion | Chr12 | 11690854 | 11691007 | 153 | |
| Deletion | Chr8 | 15262832 | 15262833 | 1 | |
| Deletion | Chr4 | 16031073 | 16031074 | 1 | |
| Deletion | Chr10 | 16252100 | 16252101 | 1 | |
| Deletion | Chr3 | 18453027 | 18453028 | 1 | |
| Deletion | Chr11 | 19461225 | 19461226 | 1 | |
| Deletion | Chr1 | 21765199 | 21765201 | 2 | 2 |
| Deletion | Chr4 | 29014692 | 29014693 | 1 | OsKitaake04g218800 |
| Deletion | Chr1 | 33075001 | 33128000 | 52999 | 11 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 25967012 | 25967015 | 2 | |
| Insertion | Chr9 | 11763797 | 11763799 | 1 | |
| Insertion | Chr5 | 12464015 | 12464017 | 1 | |
| Insertion | Chr6 | 6079 | 6081 | 1 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 10722882 | Chr1 | 15409129 |