Search Kitaake

Mutant Information

Mutant Name	FN704-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN704-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7123902 T-C Hetero INTERGENIC
SBS Chr1 44056547 A-T Homo INTERGENIC
SBS Chr2 3772148 A-C Hetero INTRON
SBS Chr2 4045625 G-T Hetero UTR_5_PRIME
SBS Chr2 4164316 C-A Hetero INTERGENIC
SBS Chr2 6454025 G-C Homo INTERGENIC
SBS Chr2 10183765 C-T Homo INTERGENIC
SBS Chr3 417694 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g006400
SBS Chr3 4592997 C-T Hetero INTERGENIC
SBS Chr3 13385652 T-A Hetero INTERGENIC
SBS Chr3 20444789 A-C Hetero INTERGENIC
SBS Chr3 21299101 C-T Hetero INTERGENIC
SBS Chr3 30387657 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g318800
SBS Chr3 30948318 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g325200
SBS Chr4 25376820 G-A Homo INTERGENIC
SBS Chr5 635841 C-T Homo INTERGENIC
SBS Chr5 927310 A-T Homo INTERGENIC
SBS Chr5 5145126 C-T Homo INTRON
SBS Chr5 28750350 A-G Hetero INTERGENIC
SBS Chr6 1793508 A-T Homo INTRON
SBS Chr6 6592568 G-A Hetero INTERGENIC
SBS Chr6 30789548 A-G Homo INTERGENIC
SBS Chr7 9910622 T-C Hetero INTERGENIC
SBS Chr7 26147354 C-T Hetero INTERGENIC
SBS Chr8 9281767 G-A Homo INTERGENIC
SBS Chr8 28280370 C-T Homo INTRON
SBS Chr9 19717264 T-C Hetero INTERGENIC
SBS Chr10 988812 A-G Homo INTERGENIC
SBS Chr12 7286875 A-T Hetero INTERGENIC
SBS Chr12 8523449 C-T Homo INTERGENIC
SBS Chr12 9291623 G-T Hetero INTERGENIC
SBS Chr12 19864121 G-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 121174 121176 2
Deletion Chr5 926259 926263 4
Deletion Chr7 1347962 1347967 5
Deletion Chr2 5284927 5284928 1
Deletion Chr11 7379241 7379252 11
Deletion Chr8 13063748 13063749 1
Deletion Chr10 13740229 13740233 4
Deletion Chr7 13801722 13801736 14
Deletion Chr6 15758741 15758897 156
Deletion Chr8 21379001 21398000 18999 3
Deletion Chr9 21732381 21732386 5
Deletion Chr6 26998485 26998486 1 OsKitaake06g242200

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 10266529 10266533 3
Insertion Chr4 3416809 3416812 2
Insertion Chr7 534130 534133 2
Insertion Chr9 14509920 14509923 2
Insertion Chr10 12679286 12679289 2
Insertion Chr4 10454656 10454658 1
Insertion Chr6 10794752 10794754 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 357720 923868 OsKitaake05g011200

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 6542351 Chr3 21405948
Translocation Chr9 6543010 Chr3 21405947
Translocation Chr9 6543022 Chr5 923888 OsKitaake05g011200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7123902	T-C	Hetero	INTERGENIC
SBS	Chr1	44056547	A-T	Homo	INTERGENIC
SBS	Chr2	3772148	A-C	Hetero	INTRON
SBS	Chr2	4045625	G-T	Hetero	UTR_5_PRIME
SBS	Chr2	4164316	C-A	Hetero	INTERGENIC
SBS	Chr2	6454025	G-C	Homo	INTERGENIC
SBS	Chr2	10183765	C-T	Homo	INTERGENIC
SBS	Chr3	417694	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g006400
SBS	Chr3	4592997	C-T	Hetero	INTERGENIC
SBS	Chr3	13385652	T-A	Hetero	INTERGENIC
SBS	Chr3	20444789	A-C	Hetero	INTERGENIC
SBS	Chr3	21299101	C-T	Hetero	INTERGENIC
SBS	Chr3	30387657	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g318800
SBS	Chr3	30948318	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g325200
SBS	Chr4	25376820	G-A	Homo	INTERGENIC
SBS	Chr5	635841	C-T	Homo	INTERGENIC
SBS	Chr5	927310	A-T	Homo	INTERGENIC
SBS	Chr5	5145126	C-T	Homo	INTRON
SBS	Chr5	28750350	A-G	Hetero	INTERGENIC
SBS	Chr6	1793508	A-T	Homo	INTRON
SBS	Chr6	6592568	G-A	Hetero	INTERGENIC
SBS	Chr6	30789548	A-G	Homo	INTERGENIC
SBS	Chr7	9910622	T-C	Hetero	INTERGENIC
SBS	Chr7	26147354	C-T	Hetero	INTERGENIC
SBS	Chr8	9281767	G-A	Homo	INTERGENIC
SBS	Chr8	28280370	C-T	Homo	INTRON
SBS	Chr9	19717264	T-C	Hetero	INTERGENIC
SBS	Chr10	988812	A-G	Homo	INTERGENIC
SBS	Chr12	7286875	A-T	Hetero	INTERGENIC
SBS	Chr12	8523449	C-T	Homo	INTERGENIC
SBS	Chr12	9291623	G-T	Hetero	INTERGENIC
SBS	Chr12	19864121	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	121174	121176	2
Deletion	Chr5	926259	926263	4
Deletion	Chr7	1347962	1347967	5
Deletion	Chr2	5284927	5284928	1
Deletion	Chr11	7379241	7379252	11
Deletion	Chr8	13063748	13063749	1
Deletion	Chr10	13740229	13740233	4
Deletion	Chr7	13801722	13801736	14
Deletion	Chr6	15758741	15758897	156
Deletion	Chr8	21379001	21398000	18999	3
Deletion	Chr9	21732381	21732386	5
Deletion	Chr6	26998485	26998486	1	OsKitaake06g242200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	357720	923868	OsKitaake05g011200

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes