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Mutant Information

Mutant Name	FN705-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN705-S Alignment File
Seed Availability	No
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7916515	T-C	Homo	INTERGENIC
SBS	Chr1	15958598	G-A	Homo	INTERGENIC
SBS	Chr1	18581978	G-A	Homo	INTERGENIC
SBS	Chr2	31468385	G-T	Homo	INTERGENIC
SBS	Chr4	5020032	G-A	Homo	INTERGENIC
SBS	Chr4	6349187	T-A	Homo	INTERGENIC
SBS	Chr4	29848032	G-A	Homo	INTERGENIC
SBS	Chr5	9173127	C-G	Hetero	INTERGENIC
SBS	Chr5	19118658	C-T	Hetero	INTRON
SBS	Chr6	11780712	G-T	Hetero	INTERGENIC
SBS	Chr6	11780713	C-T	Hetero	INTERGENIC
SBS	Chr7	25325110	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	25494481	T-G	Hetero	INTRON
SBS	Chr7	26843756	A-G	Hetero	INTERGENIC
SBS	Chr8	10719206	C-T	Homo	INTERGENIC
SBS	Chr9	10446099	A-T	Hetero	INTRON
SBS	Chr10	10930848	C-A	Hetero	INTERGENIC
SBS	Chr11	24442288	T-C	Hetero	INTERGENIC
SBS	Chr11	25337199	G-A	Hetero	INTERGENIC
SBS	Chr11	26999559	G-T	Homo	INTERGENIC
SBS	Chr11	28919372	A-G	Homo	INTERGENIC
SBS	Chr11	29215605	T-C	Homo	INTERGENIC
SBS	Chr12	16968214	T-A	Hetero	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1148049	1148052	3
Deletion	Chr4	6633246	6633250	4
Deletion	Chr10	6831126	6831128	2
Deletion	Chr5	6885350	6885352	2
Deletion	Chr5	9039164	9039165	1
Deletion	Chr9	9835152	9835154	2
Deletion	Chr10	9883576	9883582	6	OsKitaake10g057700
Deletion	Chr2	18477489	18477490	1
Deletion	Chr12	19582289	19582291	2
Deletion	Chr7	20789534	20789542	8	OsKitaake07g171200
Deletion	Chr5	22952949	22952950	1
Deletion	Chr3	33004596	33004598	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr11	11876774	11876777	2
Insertion	Chr8	12921786	12921788	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	34413912	34889961
Inversion	Chr4	34413916	34890000