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Mutant Information

Mutant Name	FN706-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN706-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14520224 T-G Hetero INTERGENIC
SBS Chr1 22524272 T-A Hetero INTERGENIC
SBS Chr1 22524273 T-A Hetero INTERGENIC
SBS Chr1 22605105 T-A Hetero INTERGENIC
SBS Chr1 29753452 A-T Hetero INTERGENIC
SBS Chr2 13514011 G-A Hetero INTERGENIC
SBS Chr2 16892433 G-A Hetero INTERGENIC
SBS Chr2 22707159 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g220600
SBS Chr2 26975657 T-A Hetero INTERGENIC
SBS Chr2 27053635 G-A Hetero INTERGENIC
SBS Chr3 1565331 C-T Hetero INTERGENIC
SBS Chr3 36891200 T-C Hetero INTRON
SBS Chr4 34433949 C-A Homo INTERGENIC
SBS Chr4 36543458 C-T Hetero INTERGENIC
SBS Chr5 1104249 G-T Homo INTRON
SBS Chr6 15806908 G-A Hetero INTERGENIC
SBS Chr6 25035078 A-G Hetero INTERGENIC
SBS Chr6 26110916 G-A Hetero STOP_GAINED OsKitaake06g233400
SBS Chr6 29927198 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g280300
SBS Chr7 18547286 C-A Hetero INTERGENIC
SBS Chr9 9353597 G-T Homo INTERGENIC
SBS Chr10 3102938 A-T Hetero INTERGENIC
SBS Chr10 5361950 C-A Hetero INTERGENIC
SBS Chr10 18620727 C-T Homo SPLICE_SITE_REGION
SBS Chr11 13202170 G-T Hetero INTERGENIC
SBS Chr11 20406451 C-T Hetero INTERGENIC
SBS Chr11 21242698 T-C Homo SYNONYMOUS_CODING
SBS Chr11 28389440 A-T Homo INTERGENIC
SBS Chr12 97725 C-T Hetero INTERGENIC
SBS Chr12 12052207 A-T Homo INTERGENIC
SBS Chr12 21357335 C-T Hetero INTERGENIC

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2981314 2981316 2
Deletion Chr6 5580001 5598000 17999 2
Deletion Chr7 20096788 20096790 2
Deletion Chr4 23691675 23691680 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 16029921 16029924 2
Insertion Chr8 615099 615102 2
Insertion Chr2 18179771 18179773 1
Insertion Chr5 4788774 4788776 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 3157752 3225565
Inversion Chr12 3157756 3225573

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14520224	T-G	Hetero	INTERGENIC
SBS	Chr1	22524272	T-A	Hetero	INTERGENIC
SBS	Chr1	22524273	T-A	Hetero	INTERGENIC
SBS	Chr1	22605105	T-A	Hetero	INTERGENIC
SBS	Chr1	29753452	A-T	Hetero	INTERGENIC
SBS	Chr2	13514011	G-A	Hetero	INTERGENIC
SBS	Chr2	16892433	G-A	Hetero	INTERGENIC
SBS	Chr2	22707159	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g220600
SBS	Chr2	26975657	T-A	Hetero	INTERGENIC
SBS	Chr2	27053635	G-A	Hetero	INTERGENIC
SBS	Chr3	1565331	C-T	Hetero	INTERGENIC
SBS	Chr3	36891200	T-C	Hetero	INTRON
SBS	Chr4	34433949	C-A	Homo	INTERGENIC
SBS	Chr4	36543458	C-T	Hetero	INTERGENIC
SBS	Chr5	1104249	G-T	Homo	INTRON
SBS	Chr6	15806908	G-A	Hetero	INTERGENIC
SBS	Chr6	25035078	A-G	Hetero	INTERGENIC
SBS	Chr6	26110916	G-A	Hetero	STOP_GAINED	OsKitaake06g233400
SBS	Chr6	29927198	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g280300
SBS	Chr7	18547286	C-A	Hetero	INTERGENIC
SBS	Chr9	9353597	G-T	Homo	INTERGENIC
SBS	Chr10	3102938	A-T	Hetero	INTERGENIC
SBS	Chr10	5361950	C-A	Hetero	INTERGENIC
SBS	Chr10	18620727	C-T	Homo	SPLICE_SITE_REGION
SBS	Chr11	13202170	G-T	Hetero	INTERGENIC
SBS	Chr11	20406451	C-T	Hetero	INTERGENIC
SBS	Chr11	21242698	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr11	28389440	A-T	Homo	INTERGENIC
SBS	Chr12	97725	C-T	Hetero	INTERGENIC
SBS	Chr12	12052207	A-T	Homo	INTERGENIC
SBS	Chr12	21357335	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2981314	2981316	2
Deletion	Chr6	5580001	5598000	17999	2
Deletion	Chr7	20096788	20096790	2
Deletion	Chr4	23691675	23691680	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3157752	3225565
Inversion	Chr12	3157756	3225573

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes