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Mutant Information

Mutant Name	FN707-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN707-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9190052 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 39178498 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g420800
SBS Chr1 39625011 T-A Hetero INTERGENIC
SBS Chr2 211904 A-T Homo INTRON
SBS Chr2 2846156 C-T Homo INTERGENIC
SBS Chr2 3671755 C-T Homo INTERGENIC
SBS Chr3 5247413 T-A Hetero INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 29138032 G-A Hetero INTERGENIC
SBS Chr3 33431723 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g357500
SBS Chr3 35910027 A-T Hetero INTERGENIC
SBS Chr4 4245628 C-A Hetero INTERGENIC
SBS Chr5 14512169 A-G Homo INTERGENIC
SBS Chr6 20895457 G-A Hetero INTERGENIC
SBS Chr7 12812162 T-A Homo NON_SYNONYMOUS_CODING OsKitaake07g113600
SBS Chr7 16966748 G-A Hetero INTERGENIC
SBS Chr7 26534660 G-A Hetero INTERGENIC
SBS Chr7 26609342 G-A Hetero INTRON
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr8 16928857 T-C Hetero UTR_3_PRIME
SBS Chr8 17140415 G-T Hetero INTERGENIC
SBS Chr8 19167665 T-C Hetero INTERGENIC
SBS Chr8 19483191 A-G Hetero INTERGENIC
SBS Chr10 989197 C-A Hetero INTERGENIC
SBS Chr11 13474489 T-A Hetero INTERGENIC
SBS Chr11 14925524 G-C Hetero INTERGENIC
SBS Chr12 3614570 A-C Homo INTERGENIC
SBS Chr12 15687721 C-T Hetero INTERGENIC
SBS Chr12 15687723 A-T Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 8668229 8668394 165
Deletion Chr2 9722457 9722471 14
Deletion Chr2 10066001 10170000 103999 12
Deletion Chr8 13586662 13586673 11
Deletion Chr10 13757124 13757131 7
Deletion Chr1 20001309 20001311 2
Deletion Chr11 23369001 23459000 89999 12

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 167322 167325 2
Insertion Chr8 513028 513031 2
Insertion Chr8 15510257 15510260 2
Insertion Chr2 13854529 13854531 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 21678345 21746542 2
Inversion Chr9 21678362 21850266 OsKitaake09g190700

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 13186508 Chr5 28288670
Translocation Chr7 13187186 Chr5 28288670
Translocation Chr9 21746971 Chr3 36251743
Translocation Chr9 21850234 Chr3 36251750

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9190052	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	39178498	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g420800
SBS	Chr1	39625011	T-A	Hetero	INTERGENIC
SBS	Chr2	211904	A-T	Homo	INTRON
SBS	Chr2	2846156	C-T	Homo	INTERGENIC
SBS	Chr2	3671755	C-T	Homo	INTERGENIC
SBS	Chr3	5247413	T-A	Hetero	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	29138032	G-A	Hetero	INTERGENIC
SBS	Chr3	33431723	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g357500
SBS	Chr3	35910027	A-T	Hetero	INTERGENIC
SBS	Chr4	4245628	C-A	Hetero	INTERGENIC
SBS	Chr5	14512169	A-G	Homo	INTERGENIC
SBS	Chr6	20895457	G-A	Hetero	INTERGENIC
SBS	Chr7	12812162	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g113600
SBS	Chr7	16966748	G-A	Hetero	INTERGENIC
SBS	Chr7	26534660	G-A	Hetero	INTERGENIC
SBS	Chr7	26609342	G-A	Hetero	INTRON
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr8	16928857	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	17140415	G-T	Hetero	INTERGENIC
SBS	Chr8	19167665	T-C	Hetero	INTERGENIC
SBS	Chr8	19483191	A-G	Hetero	INTERGENIC
SBS	Chr10	989197	C-A	Hetero	INTERGENIC
SBS	Chr11	13474489	T-A	Hetero	INTERGENIC
SBS	Chr11	14925524	G-C	Hetero	INTERGENIC
SBS	Chr12	3614570	A-C	Homo	INTERGENIC
SBS	Chr12	15687721	C-T	Hetero	INTERGENIC
SBS	Chr12	15687723	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	8668229	8668394	165
Deletion	Chr2	9722457	9722471	14
Deletion	Chr2	10066001	10170000	103999	12
Deletion	Chr8	13586662	13586673	11
Deletion	Chr10	13757124	13757131	7
Deletion	Chr1	20001309	20001311	2
Deletion	Chr11	23369001	23459000	89999	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	21678345	21746542	2
Inversion	Chr9	21678362	21850266	OsKitaake09g190700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes