Search Kitaake

Mutant Information

Mutant Name	FN708-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN708-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15370035 C-A Hetero INTRON
SBS Chr1 16226482 C-T Hetero INTERGENIC
SBS Chr2 19427886 C-T Hetero INTERGENIC
SBS Chr2 19948365 T-G Hetero INTRON
SBS Chr3 19910057 T-C Homo INTERGENIC
SBS Chr3 21518064 A-T Homo INTERGENIC
SBS Chr3 32107563 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 6596418 G-A Hetero INTERGENIC
SBS Chr4 10866484 G-A Hetero INTERGENIC
SBS Chr4 28221377 A-C Hetero INTRON
SBS Chr4 28473427 A-T Hetero UTR_3_PRIME
SBS Chr5 7488518 C-T Homo INTERGENIC
SBS Chr5 17168991 T-C Homo INTERGENIC
SBS Chr6 2894359 A-G Homo INTRON
SBS Chr6 13267273 A-G Homo INTERGENIC
SBS Chr6 13268871 A-G Homo INTERGENIC
SBS Chr6 23252148 T-C Hetero INTERGENIC
SBS Chr6 24180997 A-T Hetero INTERGENIC
SBS Chr6 25543783 T-A Hetero INTRON
SBS Chr7 13340727 C-G Hetero INTERGENIC
SBS Chr7 23201430 G-A Hetero INTERGENIC
SBS Chr7 24570559 A-T Hetero INTRON
SBS Chr8 3760890 T-G Hetero INTERGENIC
SBS Chr8 4689785 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g053400
SBS Chr8 20638045 T-C Hetero INTERGENIC
SBS Chr10 5798413 T-C Hetero INTERGENIC
SBS Chr10 6795032 C-A Hetero INTERGENIC
SBS Chr10 20591841 C-T Hetero INTERGENIC
SBS Chr11 5451004 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g066800
SBS Chr11 29603188 A-T Hetero INTERGENIC
SBS Chr12 18022959 A-G Hetero INTERGENIC
SBS Chr12 21393738 T-C Hetero INTERGENIC

Deletions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3531002 3531004 2
Deletion Chr11 5592105 5592119 14
Deletion Chr9 15933940 15933944 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5014340 5014348 7
Insertion Chr5 6205447 6205452 4
Insertion Chr6 1061584 1061587 2
Insertion Chr6 17254537 17254540 2
Insertion Chr4 18345247 18345250 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15370035	C-A	Hetero	INTRON
SBS	Chr1	16226482	C-T	Hetero	INTERGENIC
SBS	Chr2	19427886	C-T	Hetero	INTERGENIC
SBS	Chr2	19948365	T-G	Hetero	INTRON
SBS	Chr3	19910057	T-C	Homo	INTERGENIC
SBS	Chr3	21518064	A-T	Homo	INTERGENIC
SBS	Chr3	32107563	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	6596418	G-A	Hetero	INTERGENIC
SBS	Chr4	10866484	G-A	Hetero	INTERGENIC
SBS	Chr4	28221377	A-C	Hetero	INTRON
SBS	Chr4	28473427	A-T	Hetero	UTR_3_PRIME
SBS	Chr5	7488518	C-T	Homo	INTERGENIC
SBS	Chr5	17168991	T-C	Homo	INTERGENIC
SBS	Chr6	2894359	A-G	Homo	INTRON
SBS	Chr6	13267273	A-G	Homo	INTERGENIC
SBS	Chr6	13268871	A-G	Homo	INTERGENIC
SBS	Chr6	23252148	T-C	Hetero	INTERGENIC
SBS	Chr6	24180997	A-T	Hetero	INTERGENIC
SBS	Chr6	25543783	T-A	Hetero	INTRON
SBS	Chr7	13340727	C-G	Hetero	INTERGENIC
SBS	Chr7	23201430	G-A	Hetero	INTERGENIC
SBS	Chr7	24570559	A-T	Hetero	INTRON
SBS	Chr8	3760890	T-G	Hetero	INTERGENIC
SBS	Chr8	4689785	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g053400
SBS	Chr8	20638045	T-C	Hetero	INTERGENIC
SBS	Chr10	5798413	T-C	Hetero	INTERGENIC
SBS	Chr10	6795032	C-A	Hetero	INTERGENIC
SBS	Chr10	20591841	C-T	Hetero	INTERGENIC
SBS	Chr11	5451004	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g066800
SBS	Chr11	29603188	A-T	Hetero	INTERGENIC
SBS	Chr12	18022959	A-G	Hetero	INTERGENIC
SBS	Chr12	21393738	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3531002	3531004	2
Deletion	Chr11	5592105	5592119	14
Deletion	Chr9	15933940	15933944	4

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes