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Mutant Information

Mutant Name	FN709-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN709-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24181465 G-A Homo INTERGENIC
SBS Chr1 25539323 C-T Hetero INTRON
SBS Chr2 23727667 T-A Hetero INTERGENIC
SBS Chr3 25542501 G-A Hetero INTERGENIC
SBS Chr3 26829432 C-G Homo INTERGENIC
SBS Chr3 29676461 A-T Homo INTERGENIC
SBS Chr5 9303659 A-C Hetero INTERGENIC
SBS Chr6 3096443 A-G Hetero UTR_3_PRIME
SBS Chr6 3776809 G-A Homo INTERGENIC
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr7 4501682 C-A Hetero INTERGENIC
SBS Chr7 6733389 A-T Hetero INTERGENIC
SBS Chr8 5348376 T-C Hetero INTERGENIC
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr9 11446100 G-A Homo NON_SYNONYMOUS_CODING OsKitaake09g071000
SBS Chr9 11446101 T-G Homo NON_SYNONYMOUS_CODING OsKitaake09g071000
SBS Chr9 15265234 G-A Homo INTERGENIC
SBS Chr9 18237124 C-G Hetero INTRON
SBS Chr9 18237192 A-T Hetero INTRON
SBS Chr9 18237218 C-T Hetero INTRON
SBS Chr11 18667772 T-A Hetero INTERGENIC
SBS Chr11 18667773 T-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1293674 1293680 6
Deletion Chr2 1563811 1563822 11
Deletion Chr10 2592183 2592185 2
Deletion Chr7 4038650 4038651 1
Deletion Chr7 5080184 5080202 18
Deletion Chr7 6741282 6741285 3
Deletion Chr8 7919513 7919514 1
Deletion Chr7 12991964 12992031 67
Deletion Chr4 13659001 13683000 23999
Deletion Chr4 17722892 17722893 1
Deletion Chr11 18644219 18644223 4 OsKitaake11g144500
Deletion Chr2 18658148 18658149 1
Deletion Chr2 20806001 20973000 166999 15
Deletion Chr5 22604323 22604325 2
Deletion Chr8 22754037 22754045 8
Deletion Chr12 25466796 25466798 2 OsKitaake12g208900
Deletion Chr8 25599226 25599233 7
Deletion Chr4 27620125 27620132 7
Deletion Chr1 42261237 42261238 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5794865 5794869 3
Insertion Chr5 21814625 21814628 2
Insertion Chr6 2252084 2252087 2
Insertion Chr12 13183351 13183354 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24181465	G-A	Homo	INTERGENIC
SBS	Chr1	25539323	C-T	Hetero	INTRON
SBS	Chr2	23727667	T-A	Hetero	INTERGENIC
SBS	Chr3	25542501	G-A	Hetero	INTERGENIC
SBS	Chr3	26829432	C-G	Homo	INTERGENIC
SBS	Chr3	29676461	A-T	Homo	INTERGENIC
SBS	Chr5	9303659	A-C	Hetero	INTERGENIC
SBS	Chr6	3096443	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	3776809	G-A	Homo	INTERGENIC
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr7	4501682	C-A	Hetero	INTERGENIC
SBS	Chr7	6733389	A-T	Hetero	INTERGENIC
SBS	Chr8	5348376	T-C	Hetero	INTERGENIC
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr9	11446100	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g071000
SBS	Chr9	11446101	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g071000
SBS	Chr9	15265234	G-A	Homo	INTERGENIC
SBS	Chr9	18237124	C-G	Hetero	INTRON
SBS	Chr9	18237192	A-T	Hetero	INTRON
SBS	Chr9	18237218	C-T	Hetero	INTRON
SBS	Chr11	18667772	T-A	Hetero	INTERGENIC
SBS	Chr11	18667773	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1293674	1293680	6
Deletion	Chr2	1563811	1563822	11
Deletion	Chr10	2592183	2592185	2
Deletion	Chr7	4038650	4038651	1
Deletion	Chr7	5080184	5080202	18
Deletion	Chr7	6741282	6741285	3
Deletion	Chr8	7919513	7919514	1
Deletion	Chr7	12991964	12992031	67
Deletion	Chr4	13659001	13683000	23999
Deletion	Chr4	17722892	17722893	1
Deletion	Chr11	18644219	18644223	4	OsKitaake11g144500
Deletion	Chr2	18658148	18658149	1
Deletion	Chr2	20806001	20973000	166999	15
Deletion	Chr5	22604323	22604325	2
Deletion	Chr8	22754037	22754045	8
Deletion	Chr12	25466796	25466798	2	OsKitaake12g208900
Deletion	Chr8	25599226	25599233	7
Deletion	Chr4	27620125	27620132	7
Deletion	Chr1	42261237	42261238	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes